Hb_001729_030

Information

Type -
Description -
Location Contig1729: 57353-62483
Sequence    

Annotation

kegg
ID smp:SMAC_08605
description hypothetical protein
nr
ID CAN61334.1
description hypothetical protein VITISV_044457 [Vitis vinifera]
swissprot
ID Q8CGT6
description Piwi-like protein 4 OS=Mus musculus GN=Piwil4 PE=1 SV=3
trembl
ID A5BG74
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044457 PE=4 SV=1
Gene Ontology
ID GO:0003723
description protein argonaute 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16405: 59025-59595 , PASA_asmbl_16406: 59365-60033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001729_030 0.0 - - hypothetical protein VITISV_044457 [Vitis vinifera]
2 Hb_019654_180 0.0956535237 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
3 Hb_009838_070 0.1185733639 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
4 Hb_003768_020 0.1268030874 - - PREDICTED: uncharacterized protein LOC105644157 [Jatropha curcas]
5 Hb_000190_230 0.1295117915 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
6 Hb_003581_230 0.1319414903 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
7 Hb_029576_060 0.138019617 - - PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
8 Hb_000832_270 0.1390958524 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000951_150 0.1411831529 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
10 Hb_004220_010 0.1476234902 - - PREDICTED: uncharacterized protein LOC105642366 [Jatropha curcas]
11 Hb_002681_210 0.1496029733 - - PREDICTED: uncharacterized protein LOC105633686 [Jatropha curcas]
12 Hb_001817_210 0.1502616603 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000020_090 0.1528082903 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
14 Hb_004650_050 0.1541116721 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_002235_070 0.156180995 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
16 Hb_000922_200 0.1565662268 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
17 Hb_000622_050 0.1591917626 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000976_400 0.1602623986 - - synaptotagmin, putative [Ricinus communis]
19 Hb_002495_090 0.1621807658 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
20 Hb_169383_010 0.162854141 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001729_030 Hb_001729_030 Hb_019654_180 Hb_019654_180 Hb_001729_030--Hb_019654_180 Hb_009838_070 Hb_009838_070 Hb_001729_030--Hb_009838_070 Hb_003768_020 Hb_003768_020 Hb_001729_030--Hb_003768_020 Hb_000190_230 Hb_000190_230 Hb_001729_030--Hb_000190_230 Hb_003581_230 Hb_003581_230 Hb_001729_030--Hb_003581_230 Hb_029576_060 Hb_029576_060 Hb_001729_030--Hb_029576_060 Hb_019654_180--Hb_000190_230 Hb_019654_180--Hb_009838_070 Hb_000951_150 Hb_000951_150 Hb_019654_180--Hb_000951_150 Hb_004032_280 Hb_004032_280 Hb_019654_180--Hb_004032_280 Hb_006831_090 Hb_006831_090 Hb_019654_180--Hb_006831_090 Hb_004650_050 Hb_004650_050 Hb_009838_070--Hb_004650_050 Hb_000327_260 Hb_000327_260 Hb_009838_070--Hb_000327_260 Hb_009393_130 Hb_009393_130 Hb_009838_070--Hb_009393_130 Hb_003680_060 Hb_003680_060 Hb_009838_070--Hb_003680_060 Hb_000711_030 Hb_000711_030 Hb_009838_070--Hb_000711_030 Hb_004096_210 Hb_004096_210 Hb_009838_070--Hb_004096_210 Hb_003768_020--Hb_003581_230 Hb_004220_010 Hb_004220_010 Hb_003768_020--Hb_004220_010 Hb_000622_050 Hb_000622_050 Hb_003768_020--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_003768_020--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_003768_020--Hb_000976_400 Hb_002235_070 Hb_002235_070 Hb_000190_230--Hb_002235_070 Hb_000950_020 Hb_000950_020 Hb_000190_230--Hb_000950_020 Hb_000190_230--Hb_000711_030 Hb_000190_230--Hb_009838_070 Hb_000590_110 Hb_000590_110 Hb_000190_230--Hb_000590_110 Hb_003581_230--Hb_004220_010 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_003581_230--Hb_000976_400 Hb_000032_360 Hb_000032_360 Hb_003581_230--Hb_000032_360 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_002276_220 Hb_002276_220 Hb_029576_060--Hb_002276_220 Hb_000163_190 Hb_000163_190 Hb_029576_060--Hb_000163_190 Hb_034235_010 Hb_034235_010 Hb_029576_060--Hb_034235_010 Hb_000608_270 Hb_000608_270 Hb_029576_060--Hb_000608_270 Hb_002704_060 Hb_002704_060 Hb_029576_060--Hb_002704_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0346086 0.0242788 0.527575 0.423553 0.0242963 0.00821008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0196478 0.0154601 0 0.00614388 0.590138

CAGE analysis