Hb_004918_010

Information

Type -
Description -
Location Contig4918: 2767-3531
Sequence    

Annotation

kegg
ID rcu:RCOM_1206820
description protein binding protein, putative
nr
ID XP_002530848.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SXZ1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1206820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004918_010 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_024758_030 0.1266782416 - - hypothetical protein JCGZ_16050 [Jatropha curcas]
3 Hb_007100_020 0.1629319446 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
4 Hb_002601_050 0.2361691545 - - Boron transporter, putative [Ricinus communis]
5 Hb_000307_040 0.2480629882 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
6 Hb_000077_170 0.2492810857 - - PREDICTED: GPI-anchored protein LORELEI-like [Jatropha curcas]
7 Hb_000866_180 0.2694295514 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
8 Hb_130250_010 0.2748642164 - - Putative disease resistance RGA4 [Gossypium arboreum]
9 Hb_000300_100 0.2749780977 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]
10 Hb_010638_010 0.2757302655 - - PREDICTED: RNA polymerase sigma factor sigC [Jatropha curcas]
11 Hb_007885_020 0.2760731213 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
12 Hb_148209_040 0.2797892608 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001205_060 0.2800889207 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
14 Hb_005694_050 0.2830762992 - - NC domain-containing family protein [Populus trichocarpa]
15 Hb_006978_020 0.2868129478 - - PREDICTED: psbP domain-containing protein 5, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_000347_100 0.291870917 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]
17 Hb_101517_010 0.2950508461 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
18 Hb_015141_010 0.2959786316 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
19 Hb_008725_090 0.2963656898 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
20 Hb_017043_040 0.2984911816 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004918_010 Hb_004918_010 Hb_024758_030 Hb_024758_030 Hb_004918_010--Hb_024758_030 Hb_007100_020 Hb_007100_020 Hb_004918_010--Hb_007100_020 Hb_002601_050 Hb_002601_050 Hb_004918_010--Hb_002601_050 Hb_000307_040 Hb_000307_040 Hb_004918_010--Hb_000307_040 Hb_000077_170 Hb_000077_170 Hb_004918_010--Hb_000077_170 Hb_000866_180 Hb_000866_180 Hb_004918_010--Hb_000866_180 Hb_024758_030--Hb_000307_040 Hb_000347_100 Hb_000347_100 Hb_024758_030--Hb_000347_100 Hb_017043_040 Hb_017043_040 Hb_024758_030--Hb_017043_040 Hb_007885_020 Hb_007885_020 Hb_024758_030--Hb_007885_020 Hb_000639_010 Hb_000639_010 Hb_024758_030--Hb_000639_010 Hb_007100_020--Hb_024758_030 Hb_007100_020--Hb_007885_020 Hb_005357_180 Hb_005357_180 Hb_007100_020--Hb_005357_180 Hb_000300_100 Hb_000300_100 Hb_007100_020--Hb_000300_100 Hb_006152_040 Hb_006152_040 Hb_007100_020--Hb_006152_040 Hb_002601_050--Hb_000077_170 Hb_001140_050 Hb_001140_050 Hb_002601_050--Hb_001140_050 Hb_036437_010 Hb_036437_010 Hb_002601_050--Hb_036437_010 Hb_001163_110 Hb_001163_110 Hb_002601_050--Hb_001163_110 Hb_000511_030 Hb_000511_030 Hb_002601_050--Hb_000511_030 Hb_010638_010 Hb_010638_010 Hb_002601_050--Hb_010638_010 Hb_000907_160 Hb_000907_160 Hb_000307_040--Hb_000907_160 Hb_000563_470 Hb_000563_470 Hb_000307_040--Hb_000563_470 Hb_007632_070 Hb_007632_070 Hb_000307_040--Hb_007632_070 Hb_039222_010 Hb_039222_010 Hb_000307_040--Hb_039222_010 Hb_132840_150 Hb_132840_150 Hb_000307_040--Hb_132840_150 Hb_081930_010 Hb_081930_010 Hb_000077_170--Hb_081930_010 Hb_000077_170--Hb_001140_050 Hb_000077_170--Hb_010638_010 Hb_003905_020 Hb_003905_020 Hb_000077_170--Hb_003905_020 Hb_101517_010 Hb_101517_010 Hb_000866_180--Hb_101517_010 Hb_111528_010 Hb_111528_010 Hb_000866_180--Hb_111528_010 Hb_002284_270 Hb_002284_270 Hb_000866_180--Hb_002284_270 Hb_004096_200 Hb_004096_200 Hb_000866_180--Hb_004096_200 Hb_015141_010 Hb_015141_010 Hb_000866_180--Hb_015141_010 Hb_000340_200 Hb_000340_200 Hb_000866_180--Hb_000340_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.120084 0.0827712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0716454 0 0 0.0456748 0.112555

CAGE analysis