Hb_000866_180

Information

Type -
Description -
Location Contig866: 144107-145168
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16090g
description POPTRDRAFT_799047; hypothetical protein
nr
ID XP_011023338.1
description PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
swissprot
ID Q9C971
description Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=GA3OX4 PE=1 SV=1
trembl
ID B9GQ95
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s16090g PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 3-beta-dioxygenase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_180 0.0 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
2 Hb_101517_010 0.2034806569 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
3 Hb_111528_010 0.2334868418 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
4 Hb_002284_270 0.2357873171 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
5 Hb_004096_200 0.2382796154 - - PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]
6 Hb_015141_010 0.2418511639 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
7 Hb_000340_200 0.2468064038 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
8 Hb_000110_280 0.2481567908 - - PREDICTED: uncharacterized protein LOC105642012, partial [Jatropha curcas]
9 Hb_000200_360 0.2511717177 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
10 Hb_009393_140 0.2536306659 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
11 Hb_000395_250 0.2545834007 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
12 Hb_130250_010 0.2550213251 - - Putative disease resistance RGA4 [Gossypium arboreum]
13 Hb_001999_070 0.2561910983 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
14 Hb_024758_030 0.2589726999 - - hypothetical protein JCGZ_16050 [Jatropha curcas]
15 Hb_000264_050 0.261627766 - - hypothetical protein POPTR_0011s04750g [Populus trichocarpa]
16 Hb_002601_050 0.2642440884 - - Boron transporter, putative [Ricinus communis]
17 Hb_004586_270 0.2675939254 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
18 Hb_169383_010 0.268081765 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
19 Hb_004918_010 0.2694295514 - - protein binding protein, putative [Ricinus communis]
20 Hb_010589_030 0.2694925895 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]

Gene co-expression network

sample Hb_000866_180 Hb_000866_180 Hb_101517_010 Hb_101517_010 Hb_000866_180--Hb_101517_010 Hb_111528_010 Hb_111528_010 Hb_000866_180--Hb_111528_010 Hb_002284_270 Hb_002284_270 Hb_000866_180--Hb_002284_270 Hb_004096_200 Hb_004096_200 Hb_000866_180--Hb_004096_200 Hb_015141_010 Hb_015141_010 Hb_000866_180--Hb_015141_010 Hb_000340_200 Hb_000340_200 Hb_000866_180--Hb_000340_200 Hb_000395_250 Hb_000395_250 Hb_101517_010--Hb_000395_250 Hb_000031_210 Hb_000031_210 Hb_101517_010--Hb_000031_210 Hb_001006_110 Hb_001006_110 Hb_101517_010--Hb_001006_110 Hb_022693_020 Hb_022693_020 Hb_101517_010--Hb_022693_020 Hb_009393_140 Hb_009393_140 Hb_101517_010--Hb_009393_140 Hb_004052_030 Hb_004052_030 Hb_101517_010--Hb_004052_030 Hb_000118_090 Hb_000118_090 Hb_111528_010--Hb_000118_090 Hb_009692_040 Hb_009692_040 Hb_111528_010--Hb_009692_040 Hb_001597_020 Hb_001597_020 Hb_111528_010--Hb_001597_020 Hb_003768_020 Hb_003768_020 Hb_111528_010--Hb_003768_020 Hb_111528_010--Hb_000340_200 Hb_011310_180 Hb_011310_180 Hb_002284_270--Hb_011310_180 Hb_001842_020 Hb_001842_020 Hb_002284_270--Hb_001842_020 Hb_004545_010 Hb_004545_010 Hb_002284_270--Hb_004545_010 Hb_003935_070 Hb_003935_070 Hb_002284_270--Hb_003935_070 Hb_000032_140 Hb_000032_140 Hb_002284_270--Hb_000032_140 Hb_126917_010 Hb_126917_010 Hb_002284_270--Hb_126917_010 Hb_113379_010 Hb_113379_010 Hb_004096_200--Hb_113379_010 Hb_000926_050 Hb_000926_050 Hb_004096_200--Hb_000926_050 Hb_001384_040 Hb_001384_040 Hb_004096_200--Hb_001384_040 Hb_005155_030 Hb_005155_030 Hb_004096_200--Hb_005155_030 Hb_002740_060 Hb_002740_060 Hb_004096_200--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_004096_200--Hb_011618_010 Hb_022137_050 Hb_022137_050 Hb_015141_010--Hb_022137_050 Hb_000352_280 Hb_000352_280 Hb_015141_010--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_015141_010--Hb_074197_030 Hb_172426_060 Hb_172426_060 Hb_015141_010--Hb_172426_060 Hb_000805_010 Hb_000805_010 Hb_015141_010--Hb_000805_010 Hb_015141_010--Hb_003935_070 Hb_000933_170 Hb_000933_170 Hb_000340_200--Hb_000933_170 Hb_012395_120 Hb_012395_120 Hb_000340_200--Hb_012395_120 Hb_024758_030 Hb_024758_030 Hb_000340_200--Hb_024758_030 Hb_001357_050 Hb_001357_050 Hb_000340_200--Hb_001357_050 Hb_000003_200 Hb_000003_200 Hb_000340_200--Hb_000003_200 Hb_000417_400 Hb_000417_400 Hb_000340_200--Hb_000417_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0224012 0 0.0700163 0.107995 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0513152 0 0 0.0324683 0.247513

CAGE analysis