Hb_000003_200

Information

Type -
Description -
Location Contig3: 120315-121679
Sequence    

Annotation

kegg
ID -
description -
nr
ID EMS56351.1
description hypothetical protein TRIUR3_35397 [Triticum urartu]
swissprot
ID -
description -
trembl
ID M7Z9P8
description Uncharacterized protein OS=Triticum urartu GN=TRIUR3_35397 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_200 0.0 - - hypothetical protein TRIUR3_35397 [Triticum urartu]
2 Hb_003001_050 0.2209426953 - - hypothetical protein RCOM_1749890 [Ricinus communis]
3 Hb_002701_090 0.2328522692 - - hypothetical protein POPTR_0017s13430g [Populus trichocarpa]
4 Hb_000340_200 0.2350785971 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
5 Hb_001922_030 0.2360178476 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
6 Hb_001329_180 0.2401688726 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
7 Hb_004032_340 0.2416824309 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
8 Hb_005529_020 0.249015857 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
9 Hb_000463_120 0.2500555839 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
10 Hb_004055_020 0.2538373383 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
11 Hb_000920_160 0.2574299953 - - annexin [Manihot esculenta]
12 Hb_001186_110 0.2597938398 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
13 Hb_000917_030 0.2600981743 - - PREDICTED: uncharacterized protein LOC102629571 [Citrus sinensis]
14 Hb_106099_010 0.2625971771 - - -
15 Hb_000071_040 0.2631207762 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
16 Hb_001616_010 0.2655340767 - - hypothetical protein RCOM_1749890 [Ricinus communis]
17 Hb_026527_010 0.2690217297 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
18 Hb_146036_010 0.2744646565 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
19 Hb_000120_940 0.2774195076 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
20 Hb_000392_060 0.2791841128 - - hypothetical protein JCGZ_11629 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_200 Hb_000003_200 Hb_003001_050 Hb_003001_050 Hb_000003_200--Hb_003001_050 Hb_002701_090 Hb_002701_090 Hb_000003_200--Hb_002701_090 Hb_000340_200 Hb_000340_200 Hb_000003_200--Hb_000340_200 Hb_001922_030 Hb_001922_030 Hb_000003_200--Hb_001922_030 Hb_001329_180 Hb_001329_180 Hb_000003_200--Hb_001329_180 Hb_004032_340 Hb_004032_340 Hb_000003_200--Hb_004032_340 Hb_000015_190 Hb_000015_190 Hb_003001_050--Hb_000015_190 Hb_001616_010 Hb_001616_010 Hb_003001_050--Hb_001616_010 Hb_000561_040 Hb_000561_040 Hb_003001_050--Hb_000561_040 Hb_001186_110 Hb_001186_110 Hb_003001_050--Hb_001186_110 Hb_002616_020 Hb_002616_020 Hb_003001_050--Hb_002616_020 Hb_001616_100 Hb_001616_100 Hb_003001_050--Hb_001616_100 Hb_026527_010 Hb_026527_010 Hb_002701_090--Hb_026527_010 Hb_002701_090--Hb_001329_180 Hb_000920_160 Hb_000920_160 Hb_002701_090--Hb_000920_160 Hb_002200_070 Hb_002200_070 Hb_002701_090--Hb_002200_070 Hb_001621_100 Hb_001621_100 Hb_002701_090--Hb_001621_100 Hb_000107_350 Hb_000107_350 Hb_002701_090--Hb_000107_350 Hb_000933_170 Hb_000933_170 Hb_000340_200--Hb_000933_170 Hb_012395_120 Hb_012395_120 Hb_000340_200--Hb_012395_120 Hb_024758_030 Hb_024758_030 Hb_000340_200--Hb_024758_030 Hb_001357_050 Hb_001357_050 Hb_000340_200--Hb_001357_050 Hb_000417_400 Hb_000417_400 Hb_000340_200--Hb_000417_400 Hb_031089_020 Hb_031089_020 Hb_001922_030--Hb_031089_020 Hb_001922_030--Hb_000920_160 Hb_001922_030--Hb_001329_180 Hb_000120_940 Hb_000120_940 Hb_001922_030--Hb_000120_940 Hb_001922_030--Hb_026527_010 Hb_000463_120 Hb_000463_120 Hb_001922_030--Hb_000463_120 Hb_000806_130 Hb_000806_130 Hb_001329_180--Hb_000806_130 Hb_001329_180--Hb_026527_010 Hb_000236_190 Hb_000236_190 Hb_001329_180--Hb_000236_190 Hb_030565_100 Hb_030565_100 Hb_001329_180--Hb_030565_100 Hb_000300_420 Hb_000300_420 Hb_001329_180--Hb_000300_420 Hb_006816_240 Hb_006816_240 Hb_004032_340--Hb_006816_240 Hb_005116_090 Hb_005116_090 Hb_004032_340--Hb_005116_090 Hb_004032_340--Hb_003001_050 Hb_000103_330 Hb_000103_330 Hb_004032_340--Hb_000103_330 Hb_087388_010 Hb_087388_010 Hb_004032_340--Hb_087388_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0522085 0 0.0799531 0.596084 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0956351 0 0 0.120865 0.154384

CAGE analysis