Hb_004032_340

Information

Type -
Description -
Location Contig4032: 326147-329233
Sequence    

Annotation

kegg
ID rcu:RCOM_1602300
description bubr1, putative
nr
ID XP_012073546.1
description PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
swissprot
ID O22806
description Mitotic spindle checkpoint protein BUBR1 OS=Arabidopsis thaliana GN=BUBR1 PE=1 SV=2
trembl
ID A0A067KP40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08019 PE=4 SV=1
Gene Ontology
ID GO:0007094
description mitotic spindle checkpoint protein bubr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40044: 325949-326143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_340 0.0 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
2 Hb_006816_240 0.2030209428 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
3 Hb_005116_090 0.2047939606 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003001_050 0.2283934519 - - hypothetical protein RCOM_1749890 [Ricinus communis]
5 Hb_000103_330 0.2327527125 - - PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]
6 Hb_087388_010 0.2406012941 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
7 Hb_000003_200 0.2416824309 - - hypothetical protein TRIUR3_35397 [Triticum urartu]
8 Hb_000347_520 0.2452680725 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
9 Hb_001213_060 0.2501070032 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
10 Hb_008453_040 0.2512510916 - - PREDICTED: expansin-A11 [Jatropha curcas]
11 Hb_000635_020 0.2535331953 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009569_030 0.2536111349 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
13 Hb_001616_010 0.257104137 - - hypothetical protein RCOM_1749890 [Ricinus communis]
14 Hb_000062_280 0.2590761107 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
15 Hb_000307_040 0.2604940155 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_009079_040 0.2609359732 - - BnaA02g30070D [Brassica napus]
17 Hb_135121_010 0.2611407833 - - PREDICTED: uncharacterized protein LOC105635544 [Jatropha curcas]
18 Hb_000027_280 0.2614324105 - - PREDICTED: uncharacterized protein LOC105642051 [Jatropha curcas]
19 Hb_085829_010 0.261967077 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
20 Hb_000506_050 0.2623814559 - - PREDICTED: thymidine kinase [Jatropha curcas]

Gene co-expression network

sample Hb_004032_340 Hb_004032_340 Hb_006816_240 Hb_006816_240 Hb_004032_340--Hb_006816_240 Hb_005116_090 Hb_005116_090 Hb_004032_340--Hb_005116_090 Hb_003001_050 Hb_003001_050 Hb_004032_340--Hb_003001_050 Hb_000103_330 Hb_000103_330 Hb_004032_340--Hb_000103_330 Hb_087388_010 Hb_087388_010 Hb_004032_340--Hb_087388_010 Hb_000003_200 Hb_000003_200 Hb_004032_340--Hb_000003_200 Hb_006816_240--Hb_005116_090 Hb_000635_020 Hb_000635_020 Hb_006816_240--Hb_000635_020 Hb_000236_210 Hb_000236_210 Hb_006816_240--Hb_000236_210 Hb_005843_020 Hb_005843_020 Hb_006816_240--Hb_005843_020 Hb_003544_080 Hb_003544_080 Hb_006816_240--Hb_003544_080 Hb_000997_080 Hb_000997_080 Hb_006816_240--Hb_000997_080 Hb_005116_090--Hb_000635_020 Hb_034713_010 Hb_034713_010 Hb_005116_090--Hb_034713_010 Hb_002228_120 Hb_002228_120 Hb_005116_090--Hb_002228_120 Hb_140627_040 Hb_140627_040 Hb_005116_090--Hb_140627_040 Hb_015292_020 Hb_015292_020 Hb_005116_090--Hb_015292_020 Hb_000015_190 Hb_000015_190 Hb_003001_050--Hb_000015_190 Hb_001616_010 Hb_001616_010 Hb_003001_050--Hb_001616_010 Hb_000561_040 Hb_000561_040 Hb_003001_050--Hb_000561_040 Hb_001186_110 Hb_001186_110 Hb_003001_050--Hb_001186_110 Hb_002616_020 Hb_002616_020 Hb_003001_050--Hb_002616_020 Hb_001616_100 Hb_001616_100 Hb_003001_050--Hb_001616_100 Hb_000093_090 Hb_000093_090 Hb_000103_330--Hb_000093_090 Hb_015934_080 Hb_015934_080 Hb_000103_330--Hb_015934_080 Hb_012518_080 Hb_012518_080 Hb_000103_330--Hb_012518_080 Hb_002292_080 Hb_002292_080 Hb_000103_330--Hb_002292_080 Hb_064546_010 Hb_064546_010 Hb_000103_330--Hb_064546_010 Hb_033312_070 Hb_033312_070 Hb_000103_330--Hb_033312_070 Hb_008453_040 Hb_008453_040 Hb_087388_010--Hb_008453_040 Hb_000347_520 Hb_000347_520 Hb_087388_010--Hb_000347_520 Hb_010866_020 Hb_010866_020 Hb_087388_010--Hb_010866_020 Hb_005870_010 Hb_005870_010 Hb_087388_010--Hb_005870_010 Hb_000170_180 Hb_000170_180 Hb_087388_010--Hb_000170_180 Hb_000003_200--Hb_003001_050 Hb_002701_090 Hb_002701_090 Hb_000003_200--Hb_002701_090 Hb_000340_200 Hb_000340_200 Hb_000003_200--Hb_000340_200 Hb_001922_030 Hb_001922_030 Hb_000003_200--Hb_001922_030 Hb_001329_180 Hb_001329_180 Hb_000003_200--Hb_001329_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0339131 0 0.496285 1.50832 0 0.0601258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.234779 0 0 0.200059 0.122038

CAGE analysis