Hb_087388_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig87388: 4153-5466
Sequence    

Annotation

kegg
ID rcu:RCOM_0906780
description DNA binding protein, putative
nr
ID XP_012092393.1
description PREDICTED: transcription factor DYT1 [Jatropha curcas]
swissprot
ID O81900
description Transcription factor DYT1 OS=Arabidopsis thaliana GN=DYT1 PE=2 SV=1
trembl
ID A0A067JLF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21306 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor dysfunctional tapetum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_087388_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
2 Hb_008453_040 0.0863130391 - - PREDICTED: expansin-A11 [Jatropha curcas]
3 Hb_000347_520 0.2036518388 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
4 Hb_010866_020 0.2074481997 - - unnamed protein product [Vitis vinifera]
5 Hb_005870_010 0.2107125319 - - -
6 Hb_000170_180 0.2121204377 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
7 Hb_004032_340 0.2406012941 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
8 Hb_000027_280 0.2585895646 - - PREDICTED: uncharacterized protein LOC105642051 [Jatropha curcas]
9 Hb_000170_170 0.2719715254 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
10 Hb_002855_020 0.2775874981 - - -
11 Hb_002986_040 0.2936234276 - - PREDICTED: uncharacterized protein LOC105639694 [Jatropha curcas]
12 Hb_000367_110 0.2946406903 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
13 Hb_000291_170 0.2973893025 - - PREDICTED: inactive rhomboid protein 1 isoform X1 [Jatropha curcas]
14 Hb_180924_010 0.3012673952 - - CPI-4 [Morus alba var. atropurpurea]
15 Hb_006469_110 0.305746775 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
16 Hb_171276_010 0.3110219382 - - -
17 Hb_004308_010 0.3154275674 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
18 Hb_009079_040 0.3229206717 - - BnaA02g30070D [Brassica napus]
19 Hb_002641_170 0.3246754156 - - zinc finger protein, putative [Ricinus communis]
20 Hb_020259_020 0.3247567781 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_087388_010 Hb_087388_010 Hb_008453_040 Hb_008453_040 Hb_087388_010--Hb_008453_040 Hb_000347_520 Hb_000347_520 Hb_087388_010--Hb_000347_520 Hb_010866_020 Hb_010866_020 Hb_087388_010--Hb_010866_020 Hb_005870_010 Hb_005870_010 Hb_087388_010--Hb_005870_010 Hb_000170_180 Hb_000170_180 Hb_087388_010--Hb_000170_180 Hb_004032_340 Hb_004032_340 Hb_087388_010--Hb_004032_340 Hb_008453_040--Hb_000347_520 Hb_002986_040 Hb_002986_040 Hb_008453_040--Hb_002986_040 Hb_008453_040--Hb_010866_020 Hb_180924_010 Hb_180924_010 Hb_008453_040--Hb_180924_010 Hb_008453_040--Hb_004032_340 Hb_000347_520--Hb_010866_020 Hb_006469_110 Hb_006469_110 Hb_000347_520--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_000347_520--Hb_003333_070 Hb_000188_080 Hb_000188_080 Hb_000347_520--Hb_000188_080 Hb_000367_110 Hb_000367_110 Hb_000347_520--Hb_000367_110 Hb_002309_030 Hb_002309_030 Hb_000347_520--Hb_002309_030 Hb_010866_020--Hb_005870_010 Hb_004308_010 Hb_004308_010 Hb_010866_020--Hb_004308_010 Hb_010866_020--Hb_006469_110 Hb_000170_170 Hb_000170_170 Hb_010866_020--Hb_000170_170 Hb_005870_010--Hb_000170_170 Hb_005870_010--Hb_004308_010 Hb_020259_020 Hb_020259_020 Hb_005870_010--Hb_020259_020 Hb_005870_010--Hb_000347_520 Hb_000614_310 Hb_000614_310 Hb_000170_180--Hb_000614_310 Hb_000170_180--Hb_000347_520 Hb_000170_180--Hb_000367_110 Hb_001195_670 Hb_001195_670 Hb_000170_180--Hb_001195_670 Hb_000170_180--Hb_004308_010 Hb_006816_240 Hb_006816_240 Hb_004032_340--Hb_006816_240 Hb_005116_090 Hb_005116_090 Hb_004032_340--Hb_005116_090 Hb_003001_050 Hb_003001_050 Hb_004032_340--Hb_003001_050 Hb_000103_330 Hb_000103_330 Hb_004032_340--Hb_000103_330 Hb_000003_200 Hb_000003_200 Hb_004032_340--Hb_000003_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0721524 0.19077 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0720259 0 0 0.0229619 0

CAGE analysis