Hb_000103_330

Information

Type -
Description -
Location Contig103: 282026-285774
Sequence    

Annotation

kegg
ID tcc:TCM_020712
description DNA repair family protein
nr
ID XP_006588512.1
description PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]
swissprot
ID Q96449
description Meiotic recombination protein DMC1 homolog OS=Glycine max PE=2 SV=1
trembl
ID K7LL69
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005634
description meiotic recombination protein dmc1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01228: 282399-283049 , PASA_asmbl_01229: 284530-285461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000103_330 0.0 - - PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]
2 Hb_000093_090 0.1380790538 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
3 Hb_015934_080 0.1520186788 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
4 Hb_012518_080 0.1528711037 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
5 Hb_002292_080 0.1539392979 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_064546_010 0.165297537 - - PREDICTED: peroxidase 3 [Jatropha curcas]
7 Hb_033312_070 0.1682443841 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
8 Hb_002681_120 0.1696210009 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
9 Hb_005253_020 0.1704734564 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
10 Hb_030685_010 0.1767088571 - - -
11 Hb_003540_120 0.1776445133 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_000162_190 0.1786998896 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
13 Hb_000735_020 0.1787508454 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_135121_010 0.1798068897 - - PREDICTED: uncharacterized protein LOC105635544 [Jatropha curcas]
15 Hb_000303_060 0.1802249626 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_000959_130 0.1810241122 - - organic anion transporter, putative [Ricinus communis]
17 Hb_001348_010 0.1819306283 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
18 Hb_000853_250 0.1821558573 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
19 Hb_002701_030 0.182257532 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_001473_060 0.1828934795 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000103_330 Hb_000103_330 Hb_000093_090 Hb_000093_090 Hb_000103_330--Hb_000093_090 Hb_015934_080 Hb_015934_080 Hb_000103_330--Hb_015934_080 Hb_012518_080 Hb_012518_080 Hb_000103_330--Hb_012518_080 Hb_002292_080 Hb_002292_080 Hb_000103_330--Hb_002292_080 Hb_064546_010 Hb_064546_010 Hb_000103_330--Hb_064546_010 Hb_033312_070 Hb_033312_070 Hb_000103_330--Hb_033312_070 Hb_000093_090--Hb_002292_080 Hb_000162_190 Hb_000162_190 Hb_000093_090--Hb_000162_190 Hb_000853_250 Hb_000853_250 Hb_000093_090--Hb_000853_250 Hb_003935_040 Hb_003935_040 Hb_000093_090--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000093_090--Hb_001141_440 Hb_030685_010 Hb_030685_010 Hb_000093_090--Hb_030685_010 Hb_009189_100 Hb_009189_100 Hb_015934_080--Hb_009189_100 Hb_002171_020 Hb_002171_020 Hb_015934_080--Hb_002171_020 Hb_015934_080--Hb_033312_070 Hb_015934_080--Hb_003935_040 Hb_007290_050 Hb_007290_050 Hb_015934_080--Hb_007290_050 Hb_015934_080--Hb_000162_190 Hb_000735_020 Hb_000735_020 Hb_012518_080--Hb_000735_020 Hb_012518_080--Hb_002292_080 Hb_001085_190 Hb_001085_190 Hb_012518_080--Hb_001085_190 Hb_000303_060 Hb_000303_060 Hb_012518_080--Hb_000303_060 Hb_012518_080--Hb_033312_070 Hb_011918_070 Hb_011918_070 Hb_012518_080--Hb_011918_070 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_002292_080--Hb_000735_020 Hb_002292_080--Hb_000162_190 Hb_002292_080--Hb_003935_040 Hb_000984_130 Hb_000984_130 Hb_064546_010--Hb_000984_130 Hb_064546_010--Hb_000735_020 Hb_001357_050 Hb_001357_050 Hb_064546_010--Hb_001357_050 Hb_116647_010 Hb_116647_010 Hb_064546_010--Hb_116647_010 Hb_003606_050 Hb_003606_050 Hb_064546_010--Hb_003606_050 Hb_064546_010--Hb_033312_070 Hb_006788_110 Hb_006788_110 Hb_033312_070--Hb_006788_110 Hb_033312_070--Hb_000735_020 Hb_033312_070--Hb_011918_070 Hb_033312_070--Hb_001085_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019367 0.0515904 0.774787 1.57333 0.0557168 0.0414011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0885581 0 0 0.419155 0.43064

CAGE analysis