Hb_000170_180

Information

Type -
Description -
Location Contig170: 269248-269601
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_011002457.1
description PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_180 0.0 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
2 Hb_000614_310 0.1953624829 - - conserved hypothetical protein [Ricinus communis]
3 Hb_087388_010 0.2121204377 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
4 Hb_000347_520 0.2273774524 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
5 Hb_000367_110 0.2279514953 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
6 Hb_001195_670 0.2504351799 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
7 Hb_004308_010 0.2505083699 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
8 Hb_000188_080 0.268468335 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
9 Hb_010866_020 0.2741050699 - - unnamed protein product [Vitis vinifera]
10 Hb_005870_010 0.2804968235 - - -
11 Hb_004032_340 0.2866212122 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
12 Hb_008453_040 0.2874990992 - - PREDICTED: expansin-A11 [Jatropha curcas]
13 Hb_000291_170 0.2921665782 - - PREDICTED: inactive rhomboid protein 1 isoform X1 [Jatropha curcas]
14 Hb_000917_070 0.2936705512 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005144_140 0.2956601739 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000027_280 0.2966047684 - - PREDICTED: uncharacterized protein LOC105642051 [Jatropha curcas]
17 Hb_005348_020 0.2966051269 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000753_270 0.2969322177 - - -
19 Hb_002855_020 0.2981652714 - - -
20 Hb_001277_060 0.2990454263 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]

Gene co-expression network

sample Hb_000170_180 Hb_000170_180 Hb_000614_310 Hb_000614_310 Hb_000170_180--Hb_000614_310 Hb_087388_010 Hb_087388_010 Hb_000170_180--Hb_087388_010 Hb_000347_520 Hb_000347_520 Hb_000170_180--Hb_000347_520 Hb_000367_110 Hb_000367_110 Hb_000170_180--Hb_000367_110 Hb_001195_670 Hb_001195_670 Hb_000170_180--Hb_001195_670 Hb_004308_010 Hb_004308_010 Hb_000170_180--Hb_004308_010 Hb_000753_270 Hb_000753_270 Hb_000614_310--Hb_000753_270 Hb_000069_290 Hb_000069_290 Hb_000614_310--Hb_000069_290 Hb_000577_060 Hb_000577_060 Hb_000614_310--Hb_000577_060 Hb_054581_010 Hb_054581_010 Hb_000614_310--Hb_054581_010 Hb_001277_060 Hb_001277_060 Hb_000614_310--Hb_001277_060 Hb_008453_040 Hb_008453_040 Hb_087388_010--Hb_008453_040 Hb_087388_010--Hb_000347_520 Hb_010866_020 Hb_010866_020 Hb_087388_010--Hb_010866_020 Hb_005870_010 Hb_005870_010 Hb_087388_010--Hb_005870_010 Hb_004032_340 Hb_004032_340 Hb_087388_010--Hb_004032_340 Hb_000347_520--Hb_010866_020 Hb_006469_110 Hb_006469_110 Hb_000347_520--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_000347_520--Hb_003333_070 Hb_000188_080 Hb_000188_080 Hb_000347_520--Hb_000188_080 Hb_000347_520--Hb_000367_110 Hb_002309_030 Hb_002309_030 Hb_000347_520--Hb_002309_030 Hb_002641_170 Hb_002641_170 Hb_000367_110--Hb_002641_170 Hb_000367_110--Hb_000188_080 Hb_000367_110--Hb_004308_010 Hb_004218_100 Hb_004218_100 Hb_000367_110--Hb_004218_100 Hb_003988_020 Hb_003988_020 Hb_000367_110--Hb_003988_020 Hb_000450_170 Hb_000450_170 Hb_001195_670--Hb_000450_170 Hb_005529_020 Hb_005529_020 Hb_001195_670--Hb_005529_020 Hb_000028_620 Hb_000028_620 Hb_001195_670--Hb_000028_620 Hb_003001_050 Hb_003001_050 Hb_001195_670--Hb_003001_050 Hb_000015_140 Hb_000015_140 Hb_001195_670--Hb_000015_140 Hb_066207_020 Hb_066207_020 Hb_001195_670--Hb_066207_020 Hb_004308_010--Hb_003333_070 Hb_004308_010--Hb_000577_060 Hb_004308_010--Hb_000753_270 Hb_004308_010--Hb_002309_030 Hb_004308_010--Hb_000188_080 Hb_004308_010--Hb_010866_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0857025 1.06985 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.25512 0 0 0.177155 0

CAGE analysis