Hb_000069_290

Information

Type -
Description -
Location Contig69: 314647-315051
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09500g
description POPTRDRAFT_572402; hypothetical protein
nr
ID XP_002320869.2
description hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
swissprot
ID Q39056
description Cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial OS=Arabidopsis thaliana GN=CNX3 PE=1 SV=1
trembl
ID B9I8Y8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09500g PE=3 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_290 0.0 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
2 Hb_000753_270 0.0458844409 - - -
3 Hb_054581_010 0.0476759147 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
4 Hb_000577_060 0.1488601716 - - -
5 Hb_000614_310 0.1756065869 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004308_010 0.1850901795 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
7 Hb_027450_020 0.197940009 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
8 Hb_009486_110 0.1996969909 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
9 Hb_005870_010 0.2652697554 - - -
10 Hb_001277_060 0.281875463 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
11 Hb_000181_370 0.2878452856 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006775_050 0.2935946675 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
13 Hb_010866_020 0.294246785 - - unnamed protein product [Vitis vinifera]
14 Hb_000188_080 0.2950717934 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
15 Hb_020259_020 0.2966963078 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
16 Hb_003207_050 0.2991286367 - - PREDICTED: cucumisin-like [Jatropha curcas]
17 Hb_000170_180 0.3000261312 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
18 Hb_002309_030 0.3028029783 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
19 Hb_000367_110 0.3094292077 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
20 Hb_003333_070 0.3100221708 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000069_290 Hb_000069_290 Hb_000753_270 Hb_000753_270 Hb_000069_290--Hb_000753_270 Hb_054581_010 Hb_054581_010 Hb_000069_290--Hb_054581_010 Hb_000577_060 Hb_000577_060 Hb_000069_290--Hb_000577_060 Hb_000614_310 Hb_000614_310 Hb_000069_290--Hb_000614_310 Hb_004308_010 Hb_004308_010 Hb_000069_290--Hb_004308_010 Hb_027450_020 Hb_027450_020 Hb_000069_290--Hb_027450_020 Hb_000753_270--Hb_054581_010 Hb_000753_270--Hb_000577_060 Hb_000753_270--Hb_004308_010 Hb_000753_270--Hb_000614_310 Hb_000753_270--Hb_027450_020 Hb_054581_010--Hb_027450_020 Hb_009486_110 Hb_009486_110 Hb_054581_010--Hb_009486_110 Hb_054581_010--Hb_000577_060 Hb_054581_010--Hb_000614_310 Hb_000577_060--Hb_004308_010 Hb_000577_060--Hb_000614_310 Hb_000188_080 Hb_000188_080 Hb_000577_060--Hb_000188_080 Hb_000170_180 Hb_000170_180 Hb_000614_310--Hb_000170_180 Hb_001277_060 Hb_001277_060 Hb_000614_310--Hb_001277_060 Hb_003333_070 Hb_003333_070 Hb_004308_010--Hb_003333_070 Hb_002309_030 Hb_002309_030 Hb_004308_010--Hb_002309_030 Hb_004308_010--Hb_000188_080 Hb_010866_020 Hb_010866_020 Hb_004308_010--Hb_010866_020 Hb_027450_020--Hb_009486_110 Hb_006775_050 Hb_006775_050 Hb_027450_020--Hb_006775_050 Hb_019863_020 Hb_019863_020 Hb_027450_020--Hb_019863_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.796543 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.246205 0 0 0 0

CAGE analysis