Hb_019863_020

Information

Type -
Description -
Location Contig19863: 42940-43419
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13730g
description POPTRDRAFT_777966; hypothetical protein
nr
ID XP_012089738.1
description PREDICTED: wound-induced protein 1 [Jatropha curcas]
swissprot
ID P20144
description Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1
trembl
ID A0A067JG44
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019863_020 0.0 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
2 Hb_006775_050 0.0521551371 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
3 Hb_070268_010 0.102863602 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_009486_110 0.1478493705 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
5 Hb_027450_020 0.1496200537 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
6 Hb_000179_160 0.2065025594 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
7 Hb_007218_030 0.2215688966 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
8 Hb_002299_020 0.2903049149 - - conserved hypothetical protein [Ricinus communis]
9 Hb_054581_010 0.2981469823 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
10 Hb_000574_500 0.3083057879 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
11 Hb_001199_120 0.3172863549 - - PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
12 Hb_022958_020 0.3267336429 - - PREDICTED: B2 protein-like [Jatropha curcas]
13 Hb_000671_180 0.3283131678 - - RING zinc finger protein, putative [Arabidopsis thaliana]
14 Hb_000069_290 0.3439126612 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
15 Hb_004903_010 0.3456919395 - - -
16 Hb_005870_010 0.3660055481 - - -
17 Hb_000329_260 0.3710393739 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
18 Hb_000753_270 0.3872115855 - - -
19 Hb_033870_010 0.3923998565 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
20 Hb_002572_030 0.4025684492 - - PREDICTED: diacylglycerol kinase theta [Jatropha curcas]

Gene co-expression network

sample Hb_019863_020 Hb_019863_020 Hb_006775_050 Hb_006775_050 Hb_019863_020--Hb_006775_050 Hb_070268_010 Hb_070268_010 Hb_019863_020--Hb_070268_010 Hb_009486_110 Hb_009486_110 Hb_019863_020--Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_019863_020--Hb_027450_020 Hb_000179_160 Hb_000179_160 Hb_019863_020--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_019863_020--Hb_007218_030 Hb_006775_050--Hb_009486_110 Hb_006775_050--Hb_027450_020 Hb_006775_050--Hb_070268_010 Hb_054581_010 Hb_054581_010 Hb_006775_050--Hb_054581_010 Hb_006775_050--Hb_000179_160 Hb_070268_010--Hb_000179_160 Hb_070268_010--Hb_007218_030 Hb_070268_010--Hb_009486_110 Hb_070268_010--Hb_027450_020 Hb_009486_110--Hb_027450_020 Hb_009486_110--Hb_054581_010 Hb_000069_290 Hb_000069_290 Hb_009486_110--Hb_000069_290 Hb_000753_270 Hb_000753_270 Hb_009486_110--Hb_000753_270 Hb_027450_020--Hb_054581_010 Hb_027450_020--Hb_000069_290 Hb_027450_020--Hb_000753_270 Hb_000179_160--Hb_007218_030 Hb_004903_010 Hb_004903_010 Hb_000179_160--Hb_004903_010 Hb_000574_500 Hb_000574_500 Hb_000179_160--Hb_000574_500 Hb_007218_030--Hb_004903_010 Hb_007218_030--Hb_000574_500 Hb_007218_030--Hb_006775_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0838384 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.143642 0 0 0 0

CAGE analysis