Hb_027450_020

Information

Type -
Description -
Location Contig27450: 4611-5270
Sequence    

Annotation

kegg
ID cit:102610572
description B3 domain-containing protein At2g31420-like
nr
ID XP_006495312.1
description PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V4UC96
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10030359mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027450_020 0.0 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
2 Hb_009486_110 0.0017843968 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
3 Hb_006775_050 0.0977354603 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
4 Hb_019863_020 0.1496200537 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
5 Hb_054581_010 0.1508993573 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
6 Hb_000069_290 0.197940009 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
7 Hb_000753_270 0.24272966 - - -
8 Hb_070268_010 0.2509984976 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_005870_010 0.2817722398 - - -
10 Hb_000614_310 0.3066601324 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000329_260 0.3349952118 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
12 Hb_004308_010 0.3353320931 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
13 Hb_020259_020 0.3403971017 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
14 Hb_000577_060 0.3410884403 - - -
15 Hb_000179_160 0.3515830509 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
16 Hb_001199_120 0.3541760911 - - PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
17 Hb_033870_010 0.3564429343 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
18 Hb_007218_030 0.3660464117 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
19 Hb_000671_180 0.3743142701 - - RING zinc finger protein, putative [Arabidopsis thaliana]
20 Hb_002299_020 0.3743506828 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_027450_020 Hb_027450_020 Hb_009486_110 Hb_009486_110 Hb_027450_020--Hb_009486_110 Hb_006775_050 Hb_006775_050 Hb_027450_020--Hb_006775_050 Hb_019863_020 Hb_019863_020 Hb_027450_020--Hb_019863_020 Hb_054581_010 Hb_054581_010 Hb_027450_020--Hb_054581_010 Hb_000069_290 Hb_000069_290 Hb_027450_020--Hb_000069_290 Hb_000753_270 Hb_000753_270 Hb_027450_020--Hb_000753_270 Hb_009486_110--Hb_006775_050 Hb_009486_110--Hb_019863_020 Hb_009486_110--Hb_054581_010 Hb_009486_110--Hb_000069_290 Hb_009486_110--Hb_000753_270 Hb_006775_050--Hb_019863_020 Hb_070268_010 Hb_070268_010 Hb_006775_050--Hb_070268_010 Hb_006775_050--Hb_054581_010 Hb_000179_160 Hb_000179_160 Hb_006775_050--Hb_000179_160 Hb_019863_020--Hb_070268_010 Hb_019863_020--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_019863_020--Hb_007218_030 Hb_054581_010--Hb_000069_290 Hb_054581_010--Hb_000753_270 Hb_000577_060 Hb_000577_060 Hb_054581_010--Hb_000577_060 Hb_000614_310 Hb_000614_310 Hb_054581_010--Hb_000614_310 Hb_000069_290--Hb_000753_270 Hb_000069_290--Hb_000577_060 Hb_000069_290--Hb_000614_310 Hb_004308_010 Hb_004308_010 Hb_000069_290--Hb_004308_010 Hb_000753_270--Hb_000577_060 Hb_000753_270--Hb_004308_010 Hb_000753_270--Hb_000614_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.104673 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0878946 0 0 0 0

CAGE analysis