Hb_070268_010

Information

Type -
Description -
Location Contig70268: 1873-4398
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070268_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_019863_020 0.102863602 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
3 Hb_000179_160 0.1048924346 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
4 Hb_007218_030 0.1202812073 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
5 Hb_006775_050 0.1546738575 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
6 Hb_009486_110 0.2492538074 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
7 Hb_027450_020 0.2509984976 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
8 Hb_002299_020 0.2630338189 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000574_500 0.2660918747 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
10 Hb_004903_010 0.2754082098 - - -
11 Hb_022958_020 0.3202230858 - - PREDICTED: B2 protein-like [Jatropha curcas]
12 Hb_001199_120 0.3269684585 - - PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
13 Hb_000671_180 0.3294832324 - - RING zinc finger protein, putative [Arabidopsis thaliana]
14 Hb_000007_050 0.3767118328 - - -
15 Hb_000075_050 0.3767118328 - - -
16 Hb_000076_010 0.3767118328 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
17 Hb_000103_500 0.3767118328 - - RNA binding protein, putative [Ricinus communis]
18 Hb_000130_290 0.3767118328 - - glycosyltransferase, putative [Ricinus communis]
19 Hb_000159_010 0.3767118328 - - -
20 Hb_000184_060 0.3767118328 - - -

Gene co-expression network

sample Hb_070268_010 Hb_070268_010 Hb_019863_020 Hb_019863_020 Hb_070268_010--Hb_019863_020 Hb_000179_160 Hb_000179_160 Hb_070268_010--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_070268_010--Hb_007218_030 Hb_006775_050 Hb_006775_050 Hb_070268_010--Hb_006775_050 Hb_009486_110 Hb_009486_110 Hb_070268_010--Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_070268_010--Hb_027450_020 Hb_019863_020--Hb_006775_050 Hb_019863_020--Hb_009486_110 Hb_019863_020--Hb_027450_020 Hb_019863_020--Hb_000179_160 Hb_019863_020--Hb_007218_030 Hb_000179_160--Hb_007218_030 Hb_004903_010 Hb_004903_010 Hb_000179_160--Hb_004903_010 Hb_000574_500 Hb_000574_500 Hb_000179_160--Hb_000574_500 Hb_000179_160--Hb_006775_050 Hb_007218_030--Hb_004903_010 Hb_007218_030--Hb_000574_500 Hb_007218_030--Hb_006775_050 Hb_006775_050--Hb_009486_110 Hb_006775_050--Hb_027450_020 Hb_054581_010 Hb_054581_010 Hb_006775_050--Hb_054581_010 Hb_009486_110--Hb_027450_020 Hb_009486_110--Hb_054581_010 Hb_000069_290 Hb_000069_290 Hb_009486_110--Hb_000069_290 Hb_000753_270 Hb_000753_270 Hb_009486_110--Hb_000753_270 Hb_027450_020--Hb_054581_010 Hb_027450_020--Hb_000069_290 Hb_027450_020--Hb_000753_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0175706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0509299 0 0 0 0

CAGE analysis