Hb_004903_010

Information

Type -
Description -
Location Contig4903: 30470-33035
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004903_010 0.0 - - -
2 Hb_034454_020 0.219359859 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_049901_010 0.2195065602 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
4 Hb_007218_030 0.2197585255 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
5 Hb_000179_160 0.2244057421 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
6 Hb_000425_050 0.2670257397 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
7 Hb_009563_020 0.2670966138 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007287_020 0.2672312074 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_001147_100 0.2674120237 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_004800_040 0.267837428 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
11 Hb_175651_010 0.2684591677 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_110798_010 0.2685043534 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_011457_010 0.2692989144 - - nucleolar protein nop56, putative [Ricinus communis]
14 Hb_032252_040 0.2716229356 - - -
15 Hb_032107_010 0.2718886727 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
16 Hb_000513_010 0.2736558802 - - -
17 Hb_070268_010 0.2754082098 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_000232_050 0.2772358022 - - -
19 Hb_136367_010 0.2824870838 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
20 Hb_086639_060 0.2865953705 - - hypothetical protein JCGZ_25622 [Jatropha curcas]

Gene co-expression network

sample Hb_004903_010 Hb_004903_010 Hb_034454_020 Hb_034454_020 Hb_004903_010--Hb_034454_020 Hb_049901_010 Hb_049901_010 Hb_004903_010--Hb_049901_010 Hb_007218_030 Hb_007218_030 Hb_004903_010--Hb_007218_030 Hb_000179_160 Hb_000179_160 Hb_004903_010--Hb_000179_160 Hb_000425_050 Hb_000425_050 Hb_004903_010--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_004903_010--Hb_009563_020 Hb_034454_020--Hb_049901_010 Hb_034454_020--Hb_000425_050 Hb_034454_020--Hb_009563_020 Hb_007287_020 Hb_007287_020 Hb_034454_020--Hb_007287_020 Hb_001147_100 Hb_001147_100 Hb_034454_020--Hb_001147_100 Hb_004800_040 Hb_004800_040 Hb_034454_020--Hb_004800_040 Hb_049901_010--Hb_000425_050 Hb_049901_010--Hb_009563_020 Hb_049901_010--Hb_007287_020 Hb_049901_010--Hb_001147_100 Hb_049901_010--Hb_004800_040 Hb_007218_030--Hb_000179_160 Hb_070268_010 Hb_070268_010 Hb_007218_030--Hb_070268_010 Hb_019863_020 Hb_019863_020 Hb_007218_030--Hb_019863_020 Hb_000574_500 Hb_000574_500 Hb_007218_030--Hb_000574_500 Hb_006775_050 Hb_006775_050 Hb_007218_030--Hb_006775_050 Hb_000179_160--Hb_070268_010 Hb_000179_160--Hb_019863_020 Hb_000179_160--Hb_000574_500 Hb_000179_160--Hb_006775_050 Hb_000425_050--Hb_009563_020 Hb_000425_050--Hb_007287_020 Hb_000425_050--Hb_001147_100 Hb_000425_050--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_000425_050--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_000425_050--Hb_110798_010 Hb_009563_020--Hb_007287_020 Hb_009563_020--Hb_001147_100 Hb_009563_020--Hb_004800_040 Hb_009563_020--Hb_175651_010 Hb_009563_020--Hb_110798_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00894864 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0841306 0 0 0.00879623 0

CAGE analysis