Hb_034454_020

Information

Type -
Description -
Location Contig34454: 20934-25795
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034454_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_049901_010 0.0006292966 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
3 Hb_000425_050 0.1126106186 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
4 Hb_009563_020 0.1127329931 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007287_020 0.1129652352 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_001147_100 0.1132769191 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_004800_040 0.1140087971 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
8 Hb_175651_010 0.1150749234 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_110798_010 0.1151522438 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_011457_010 0.1165083422 - - nucleolar protein nop56, putative [Ricinus communis]
11 Hb_032252_040 0.1204376513 - - -
12 Hb_032107_010 0.1208835289 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
13 Hb_000513_010 0.123831612 - - -
14 Hb_000232_050 0.1297171764 - - -
15 Hb_136367_010 0.1381596674 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
16 Hb_086639_060 0.1446227022 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
17 Hb_007122_030 0.146773617 - - -
18 Hb_004208_110 0.1468895616 - - -
19 Hb_004903_010 0.219359859 - - -
20 Hb_019093_010 0.246464589 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]

Gene co-expression network

sample Hb_034454_020 Hb_034454_020 Hb_049901_010 Hb_049901_010 Hb_034454_020--Hb_049901_010 Hb_000425_050 Hb_000425_050 Hb_034454_020--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_034454_020--Hb_009563_020 Hb_007287_020 Hb_007287_020 Hb_034454_020--Hb_007287_020 Hb_001147_100 Hb_001147_100 Hb_034454_020--Hb_001147_100 Hb_004800_040 Hb_004800_040 Hb_034454_020--Hb_004800_040 Hb_049901_010--Hb_000425_050 Hb_049901_010--Hb_009563_020 Hb_049901_010--Hb_007287_020 Hb_049901_010--Hb_001147_100 Hb_049901_010--Hb_004800_040 Hb_000425_050--Hb_009563_020 Hb_000425_050--Hb_007287_020 Hb_000425_050--Hb_001147_100 Hb_000425_050--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_000425_050--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_000425_050--Hb_110798_010 Hb_009563_020--Hb_007287_020 Hb_009563_020--Hb_001147_100 Hb_009563_020--Hb_004800_040 Hb_009563_020--Hb_175651_010 Hb_009563_020--Hb_110798_010 Hb_007287_020--Hb_001147_100 Hb_007287_020--Hb_004800_040 Hb_007287_020--Hb_175651_010 Hb_007287_020--Hb_110798_010 Hb_001147_100--Hb_004800_040 Hb_001147_100--Hb_175651_010 Hb_001147_100--Hb_110798_010 Hb_004800_040--Hb_175651_010 Hb_004800_040--Hb_110798_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0228274 0 0 0.00355838 0

CAGE analysis