Hb_049901_010

Information

Type -
Description -
Location Contig49901: 2803-4814
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012441885.1
description PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049901_010 0.0 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
2 Hb_034454_020 0.0006292966 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000425_050 0.1119884567 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
4 Hb_009563_020 0.112110845 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007287_020 0.1123431134 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_001147_100 0.1126548325 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_004800_040 0.1133867937 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
8 Hb_175651_010 0.1144530418 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_110798_010 0.114530371 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
10 Hb_011457_010 0.1158866254 - - nucleolar protein nop56, putative [Ricinus communis]
11 Hb_032252_040 0.1198163934 - - -
12 Hb_032107_010 0.1202623237 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
13 Hb_000513_010 0.1232107583 - - -
14 Hb_000232_050 0.1290970405 - - -
15 Hb_136367_010 0.1375405969 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
16 Hb_086639_060 0.1440044743 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
17 Hb_007122_030 0.1461556746 - - -
18 Hb_004208_110 0.1462716346 - - -
19 Hb_004903_010 0.2195065602 - - -
20 Hb_019093_010 0.2458620424 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]

Gene co-expression network

sample Hb_049901_010 Hb_049901_010 Hb_034454_020 Hb_034454_020 Hb_049901_010--Hb_034454_020 Hb_000425_050 Hb_000425_050 Hb_049901_010--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_049901_010--Hb_009563_020 Hb_007287_020 Hb_007287_020 Hb_049901_010--Hb_007287_020 Hb_001147_100 Hb_001147_100 Hb_049901_010--Hb_001147_100 Hb_004800_040 Hb_004800_040 Hb_049901_010--Hb_004800_040 Hb_034454_020--Hb_000425_050 Hb_034454_020--Hb_009563_020 Hb_034454_020--Hb_007287_020 Hb_034454_020--Hb_001147_100 Hb_034454_020--Hb_004800_040 Hb_000425_050--Hb_009563_020 Hb_000425_050--Hb_007287_020 Hb_000425_050--Hb_001147_100 Hb_000425_050--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_000425_050--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_000425_050--Hb_110798_010 Hb_009563_020--Hb_007287_020 Hb_009563_020--Hb_001147_100 Hb_009563_020--Hb_004800_040 Hb_009563_020--Hb_175651_010 Hb_009563_020--Hb_110798_010 Hb_007287_020--Hb_001147_100 Hb_007287_020--Hb_004800_040 Hb_007287_020--Hb_175651_010 Hb_007287_020--Hb_110798_010 Hb_001147_100--Hb_004800_040 Hb_001147_100--Hb_175651_010 Hb_001147_100--Hb_110798_010 Hb_004800_040--Hb_175651_010 Hb_004800_040--Hb_110798_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0465836 0 0 0.00729309 0

CAGE analysis