Hb_001147_100

Information

Type -
Description -
Location Contig1147: 131062-138295
Sequence    

Annotation

kegg
ID cam:101500443
description genome polyprotein-like
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q6XKE6
description Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001147_100 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_007287_020 0.0003146233 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_009563_020 0.0005490471 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000425_050 0.0006725682 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
5 Hb_004800_040 0.0007388317 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
6 Hb_175651_010 0.0018152163 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_110798_010 0.0018932866 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_011457_010 0.0032626667 - - nucleolar protein nop56, putative [Ricinus communis]
9 Hb_032252_040 0.0072318314 - - -
10 Hb_032107_010 0.0076823592 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
11 Hb_000513_010 0.0106618338 - - -
12 Hb_000232_050 0.0166133676 - - -
13 Hb_136367_010 0.0251579314 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.0317048193 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0338847065 - - -
16 Hb_004208_110 0.0340022278 - - -
17 Hb_049901_010 0.1126548325 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.1132769191 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.135405759 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.1381592914 - - -

Gene co-expression network

sample Hb_001147_100 Hb_001147_100 Hb_007287_020 Hb_007287_020 Hb_001147_100--Hb_007287_020 Hb_009563_020 Hb_009563_020 Hb_001147_100--Hb_009563_020 Hb_000425_050 Hb_000425_050 Hb_001147_100--Hb_000425_050 Hb_004800_040 Hb_004800_040 Hb_001147_100--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_001147_100--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_001147_100--Hb_110798_010 Hb_007287_020--Hb_009563_020 Hb_007287_020--Hb_000425_050 Hb_007287_020--Hb_004800_040 Hb_007287_020--Hb_175651_010 Hb_007287_020--Hb_110798_010 Hb_009563_020--Hb_000425_050 Hb_009563_020--Hb_004800_040 Hb_009563_020--Hb_175651_010 Hb_009563_020--Hb_110798_010 Hb_000425_050--Hb_004800_040 Hb_000425_050--Hb_175651_010 Hb_000425_050--Hb_110798_010 Hb_004800_040--Hb_175651_010 Hb_004800_040--Hb_110798_010 Hb_175651_010--Hb_110798_010 Hb_011457_010 Hb_011457_010 Hb_175651_010--Hb_011457_010 Hb_110798_010--Hb_011457_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0195721 0 0 0.00612007 0

CAGE analysis