Hb_004800_040

Information

Type -
Description -
Location Contig4800: 48496-50151
Sequence    

Annotation

kegg
ID rcu:RCOM_0066500
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_012084471.1
description PREDICTED: probable polyol transporter 6 [Jatropha curcas]
swissprot
ID Q8GXR2
description Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2
trembl
ID A0A067K5M8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20028 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable polyol transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_040 0.0 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
2 Hb_001147_100 0.0007388317 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_007287_020 0.0010534548 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_175651_010 0.0010763854 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
5 Hb_110798_010 0.0011544558 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_009563_020 0.0012878785 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000425_050 0.0014113995 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
8 Hb_011457_010 0.0025238387 - - nucleolar protein nop56, putative [Ricinus communis]
9 Hb_032252_040 0.0064930206 - - -
10 Hb_032107_010 0.0069435512 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
11 Hb_000513_010 0.0099230488 - - -
12 Hb_000232_050 0.0158746513 - - -
13 Hb_136367_010 0.0244193653 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.0309664081 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0331463544 - - -
16 Hb_004208_110 0.0332638789 - - -
17 Hb_049901_010 0.1133867937 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.1140087971 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.1346737059 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.137427493 - - -

Gene co-expression network

sample Hb_004800_040 Hb_004800_040 Hb_001147_100 Hb_001147_100 Hb_004800_040--Hb_001147_100 Hb_007287_020 Hb_007287_020 Hb_004800_040--Hb_007287_020 Hb_175651_010 Hb_175651_010 Hb_004800_040--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_004800_040--Hb_110798_010 Hb_009563_020 Hb_009563_020 Hb_004800_040--Hb_009563_020 Hb_000425_050 Hb_000425_050 Hb_004800_040--Hb_000425_050 Hb_001147_100--Hb_007287_020 Hb_001147_100--Hb_009563_020 Hb_001147_100--Hb_000425_050 Hb_001147_100--Hb_175651_010 Hb_001147_100--Hb_110798_010 Hb_007287_020--Hb_009563_020 Hb_007287_020--Hb_000425_050 Hb_007287_020--Hb_175651_010 Hb_007287_020--Hb_110798_010 Hb_175651_010--Hb_110798_010 Hb_011457_010 Hb_011457_010 Hb_175651_010--Hb_011457_010 Hb_175651_010--Hb_009563_020 Hb_110798_010--Hb_011457_010 Hb_110798_010--Hb_009563_020 Hb_009563_020--Hb_000425_050 Hb_000425_050--Hb_175651_010 Hb_000425_050--Hb_110798_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0307337 0 0 0.00964954 0

CAGE analysis