Hb_007287_020

Information

Type -
Description -
Location Contig7287: 2677-5937
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007287_020 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_009563_020 0.0002344238 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001147_100 0.0003146233 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_000425_050 0.000357945 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
5 Hb_004800_040 0.0010534548 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
6 Hb_175651_010 0.0021298388 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_110798_010 0.002207909 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_011457_010 0.0035772878 - - nucleolar protein nop56, putative [Ricinus communis]
9 Hb_032252_040 0.0075464444 - - -
10 Hb_032107_010 0.0079969709 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
11 Hb_000513_010 0.010976435 - - -
12 Hb_000232_050 0.0169279383 - - -
13 Hb_136367_010 0.0254724365 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.0320192572 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0341991188 - - -
16 Hb_004208_110 0.0343166386 - - -
17 Hb_049901_010 0.1123431134 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.1129652352 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.1357174694 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.1384708929 - - -

Gene co-expression network

sample Hb_007287_020 Hb_007287_020 Hb_009563_020 Hb_009563_020 Hb_007287_020--Hb_009563_020 Hb_001147_100 Hb_001147_100 Hb_007287_020--Hb_001147_100 Hb_000425_050 Hb_000425_050 Hb_007287_020--Hb_000425_050 Hb_004800_040 Hb_004800_040 Hb_007287_020--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_007287_020--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_007287_020--Hb_110798_010 Hb_009563_020--Hb_000425_050 Hb_009563_020--Hb_001147_100 Hb_009563_020--Hb_004800_040 Hb_009563_020--Hb_175651_010 Hb_009563_020--Hb_110798_010 Hb_001147_100--Hb_000425_050 Hb_001147_100--Hb_004800_040 Hb_001147_100--Hb_175651_010 Hb_001147_100--Hb_110798_010 Hb_000425_050--Hb_004800_040 Hb_000425_050--Hb_175651_010 Hb_000425_050--Hb_110798_010 Hb_004800_040--Hb_175651_010 Hb_004800_040--Hb_110798_010 Hb_175651_010--Hb_110798_010 Hb_011457_010 Hb_011457_010 Hb_175651_010--Hb_011457_010 Hb_110798_010--Hb_011457_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.014818 0 0 0.00462544 0

CAGE analysis