Hb_009563_020

Information

Type -
Description -
Location Contig9563: 20806-33280
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009563_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000425_050 0.0001235212 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
3 Hb_007287_020 0.0002344238 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
4 Hb_001147_100 0.0005490471 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_004800_040 0.0012878785 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
6 Hb_175651_010 0.0023642619 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_110798_010 0.0024423321 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_011457_010 0.0038117097 - - nucleolar protein nop56, putative [Ricinus communis]
9 Hb_032252_040 0.0077808599 - - -
10 Hb_032107_010 0.0082313854 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
11 Hb_000513_010 0.0112108415 - - -
12 Hb_000232_050 0.0171623217 - - -
13 Hb_136367_010 0.0257067702 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.0322535403 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0344333827 - - -
16 Hb_004208_110 0.0345509015 - - -
17 Hb_049901_010 0.112110845 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.1127329931 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.1359497127 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.1387030547 - - -

Gene co-expression network

sample Hb_009563_020 Hb_009563_020 Hb_000425_050 Hb_000425_050 Hb_009563_020--Hb_000425_050 Hb_007287_020 Hb_007287_020 Hb_009563_020--Hb_007287_020 Hb_001147_100 Hb_001147_100 Hb_009563_020--Hb_001147_100 Hb_004800_040 Hb_004800_040 Hb_009563_020--Hb_004800_040 Hb_175651_010 Hb_175651_010 Hb_009563_020--Hb_175651_010 Hb_110798_010 Hb_110798_010 Hb_009563_020--Hb_110798_010 Hb_000425_050--Hb_007287_020 Hb_000425_050--Hb_001147_100 Hb_000425_050--Hb_004800_040 Hb_000425_050--Hb_175651_010 Hb_000425_050--Hb_110798_010 Hb_007287_020--Hb_001147_100 Hb_007287_020--Hb_004800_040 Hb_007287_020--Hb_175651_010 Hb_007287_020--Hb_110798_010 Hb_001147_100--Hb_004800_040 Hb_001147_100--Hb_175651_010 Hb_001147_100--Hb_110798_010 Hb_004800_040--Hb_175651_010 Hb_004800_040--Hb_110798_010 Hb_175651_010--Hb_110798_010 Hb_011457_010 Hb_011457_010 Hb_175651_010--Hb_011457_010 Hb_110798_010--Hb_011457_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0112621 0 0 0.00351091 0

CAGE analysis