Hb_011457_010

Information

Type -
Description -
Location Contig11457: 1876-3403
Sequence    

Annotation

kegg
ID rcu:RCOM_0646490
description nucleolar protein nop56, putative
nr
ID XP_002524752.1
description nucleolar protein nop56, putative [Ricinus communis]
swissprot
ID Q9SPL4
description Vicilin-like antimicrobial peptides 2-2 OS=Macadamia integrifolia GN=AMP2-2 PE=2 SV=1
trembl
ID B9SFI3
description Nucleolar protein nop56, putative OS=Ricinus communis GN=RCOM_0646490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011457_010 0.0 - - nucleolar protein nop56, putative [Ricinus communis]
2 Hb_110798_010 0.0013693853 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_175651_010 0.0014474557 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_004800_040 0.0025238387 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
5 Hb_001147_100 0.0032626667 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_007287_020 0.0035772878 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_009563_020 0.0038117097 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000425_050 0.0039352297 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
9 Hb_032252_040 0.0039692208 - - -
10 Hb_032107_010 0.0044197588 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
11 Hb_000513_010 0.0073993204 - - -
12 Hb_000232_050 0.0133511282 - - -
13 Hb_136367_010 0.0218963127 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
14 Hb_086639_060 0.028443852 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
15 Hb_007122_030 0.0306239891 - - -
16 Hb_004208_110 0.0307415243 - - -
17 Hb_049901_010 0.1158866254 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_034454_020 0.1165083422 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_019093_010 0.1321723778 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
20 Hb_000069_680 0.1349270227 - - -

Gene co-expression network

sample Hb_011457_010 Hb_011457_010 Hb_110798_010 Hb_110798_010 Hb_011457_010--Hb_110798_010 Hb_175651_010 Hb_175651_010 Hb_011457_010--Hb_175651_010 Hb_004800_040 Hb_004800_040 Hb_011457_010--Hb_004800_040 Hb_001147_100 Hb_001147_100 Hb_011457_010--Hb_001147_100 Hb_007287_020 Hb_007287_020 Hb_011457_010--Hb_007287_020 Hb_009563_020 Hb_009563_020 Hb_011457_010--Hb_009563_020 Hb_110798_010--Hb_175651_010 Hb_110798_010--Hb_004800_040 Hb_110798_010--Hb_001147_100 Hb_110798_010--Hb_007287_020 Hb_110798_010--Hb_009563_020 Hb_175651_010--Hb_004800_040 Hb_175651_010--Hb_001147_100 Hb_175651_010--Hb_007287_020 Hb_175651_010--Hb_009563_020 Hb_004800_040--Hb_001147_100 Hb_004800_040--Hb_007287_020 Hb_004800_040--Hb_009563_020 Hb_000425_050 Hb_000425_050 Hb_004800_040--Hb_000425_050 Hb_001147_100--Hb_007287_020 Hb_001147_100--Hb_009563_020 Hb_001147_100--Hb_000425_050 Hb_007287_020--Hb_009563_020 Hb_007287_020--Hb_000425_050 Hb_009563_020--Hb_000425_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0683938 0 0 0.0217746 0

CAGE analysis