Hb_000179_160

Information

Type transcription factor
Description TF Family: NF-YA
Location Contig179: 159953-166096
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14740g
description POPTRDRAFT_561021; CCAAT-binding transcription factor family protein
nr
ID XP_012077008.1
description PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
swissprot
ID Q93ZH2
description Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2
trembl
ID B9HDV6
description CCAAT-binding transcription factor family protein OS=Populus trichocarpa GN=POPTR_0006s14740g PE=4 SV=1
Gene Ontology
ID GO:0003700
description nuclear transcription factor y subunit a-3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_160 0.0 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
2 Hb_007218_030 0.0155476105 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
3 Hb_070268_010 0.1048924346 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_019863_020 0.2065025594 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
5 Hb_004903_010 0.2244057421 - - -
6 Hb_000574_500 0.257017173 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
7 Hb_006775_050 0.2573787574 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
8 Hb_002299_020 0.272057992 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000007_050 0.2885527553 - - -
10 Hb_000075_050 0.2885527553 - - -
11 Hb_000076_010 0.2885527553 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
12 Hb_000103_500 0.2885527553 - - RNA binding protein, putative [Ricinus communis]
13 Hb_000130_290 0.2885527553 - - glycosyltransferase, putative [Ricinus communis]
14 Hb_000159_010 0.2885527553 - - -
15 Hb_000184_060 0.2885527553 - - -
16 Hb_000193_020 0.2885527553 - - -
17 Hb_000340_470 0.2885527553 - - -
18 Hb_000380_080 0.2885527553 - - hypothetical protein JCGZ_05489 [Jatropha curcas]
19 Hb_000431_110 0.2885527553 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
20 Hb_000465_370 0.2885527553 - - hypothetical protein CISIN_1g039324mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000179_160 Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_000179_160--Hb_007218_030 Hb_070268_010 Hb_070268_010 Hb_000179_160--Hb_070268_010 Hb_019863_020 Hb_019863_020 Hb_000179_160--Hb_019863_020 Hb_004903_010 Hb_004903_010 Hb_000179_160--Hb_004903_010 Hb_000574_500 Hb_000574_500 Hb_000179_160--Hb_000574_500 Hb_006775_050 Hb_006775_050 Hb_000179_160--Hb_006775_050 Hb_007218_030--Hb_070268_010 Hb_007218_030--Hb_004903_010 Hb_007218_030--Hb_019863_020 Hb_007218_030--Hb_000574_500 Hb_007218_030--Hb_006775_050 Hb_070268_010--Hb_019863_020 Hb_070268_010--Hb_006775_050 Hb_009486_110 Hb_009486_110 Hb_070268_010--Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_070268_010--Hb_027450_020 Hb_019863_020--Hb_006775_050 Hb_019863_020--Hb_009486_110 Hb_019863_020--Hb_027450_020 Hb_034454_020 Hb_034454_020 Hb_004903_010--Hb_034454_020 Hb_049901_010 Hb_049901_010 Hb_004903_010--Hb_049901_010 Hb_000425_050 Hb_000425_050 Hb_004903_010--Hb_000425_050 Hb_009563_020 Hb_009563_020 Hb_004903_010--Hb_009563_020 Hb_022958_020 Hb_022958_020 Hb_000574_500--Hb_022958_020 Hb_001199_120 Hb_001199_120 Hb_000574_500--Hb_001199_120 Hb_000574_500--Hb_070268_010 Hb_009078_040 Hb_009078_040 Hb_000574_500--Hb_009078_040 Hb_006775_050--Hb_009486_110 Hb_006775_050--Hb_027450_020 Hb_054581_010 Hb_054581_010 Hb_006775_050--Hb_054581_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.017837 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0958604 0 0 0 0

CAGE analysis