Hb_001199_120

Information

Type -
Description -
Location Contig1199: 180821-181484
Sequence    

Annotation

kegg
ID mdm:103437171
description uncharacterized LOC103437171
nr
ID XP_008373851.1
description PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
swissprot
ID -
description -
trembl
ID U5GV95
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s25000g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001199_120 0.0 - - PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
2 Hb_022958_020 0.0510970529 - - PREDICTED: B2 protein-like [Jatropha curcas]
3 Hb_000574_500 0.1653748973 - - hypothetical protein JCGZ_06123 [Jatropha curcas]
4 Hb_180924_010 0.2486498921 - - CPI-4 [Morus alba var. atropurpurea]
5 Hb_005870_010 0.2753753176 - - -
6 Hb_019863_020 0.3172863549 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
7 Hb_006775_050 0.3236763449 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
8 Hb_070268_010 0.3269684585 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_087388_010 0.339820846 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
10 Hb_008453_040 0.3479068321 - - PREDICTED: expansin-A11 [Jatropha curcas]
11 Hb_009486_110 0.3534313236 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
12 Hb_027450_020 0.3541760911 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
13 Hb_000179_160 0.3643328603 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
14 Hb_007218_030 0.3717068935 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
15 Hb_010866_020 0.3753878259 - - unnamed protein product [Vitis vinifera]
16 Hb_101319_020 0.3753957284 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
17 Hb_000170_170 0.3764261514 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
18 Hb_168326_010 0.3951140028 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Populus euphratica]
19 Hb_004200_030 0.3968866029 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
20 Hb_132840_040 0.3982868355 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001199_120 Hb_001199_120 Hb_022958_020 Hb_022958_020 Hb_001199_120--Hb_022958_020 Hb_000574_500 Hb_000574_500 Hb_001199_120--Hb_000574_500 Hb_180924_010 Hb_180924_010 Hb_001199_120--Hb_180924_010 Hb_005870_010 Hb_005870_010 Hb_001199_120--Hb_005870_010 Hb_019863_020 Hb_019863_020 Hb_001199_120--Hb_019863_020 Hb_006775_050 Hb_006775_050 Hb_001199_120--Hb_006775_050 Hb_022958_020--Hb_000574_500 Hb_022958_020--Hb_180924_010 Hb_070268_010 Hb_070268_010 Hb_022958_020--Hb_070268_010 Hb_022958_020--Hb_005870_010 Hb_022958_020--Hb_019863_020 Hb_000179_160 Hb_000179_160 Hb_000574_500--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_000574_500--Hb_007218_030 Hb_000574_500--Hb_070268_010 Hb_009078_040 Hb_009078_040 Hb_000574_500--Hb_009078_040 Hb_002986_040 Hb_002986_040 Hb_180924_010--Hb_002986_040 Hb_008453_040 Hb_008453_040 Hb_180924_010--Hb_008453_040 Hb_028621_030 Hb_028621_030 Hb_180924_010--Hb_028621_030 Hb_000009_370 Hb_000009_370 Hb_180924_010--Hb_000009_370 Hb_010866_020 Hb_010866_020 Hb_005870_010--Hb_010866_020 Hb_000170_170 Hb_000170_170 Hb_005870_010--Hb_000170_170 Hb_087388_010 Hb_087388_010 Hb_005870_010--Hb_087388_010 Hb_004308_010 Hb_004308_010 Hb_005870_010--Hb_004308_010 Hb_020259_020 Hb_020259_020 Hb_005870_010--Hb_020259_020 Hb_000347_520 Hb_000347_520 Hb_005870_010--Hb_000347_520 Hb_019863_020--Hb_006775_050 Hb_019863_020--Hb_070268_010 Hb_009486_110 Hb_009486_110 Hb_019863_020--Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_019863_020--Hb_027450_020 Hb_019863_020--Hb_000179_160 Hb_019863_020--Hb_007218_030 Hb_006775_050--Hb_009486_110 Hb_006775_050--Hb_027450_020 Hb_006775_050--Hb_070268_010 Hb_054581_010 Hb_054581_010 Hb_006775_050--Hb_054581_010 Hb_006775_050--Hb_000179_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0546889 0.0829295 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155058 0 0 0 0

CAGE analysis