Hb_005870_010

Information

Type -
Description -
Location Contig5870: 32071-33367
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005870_010 0.0 - - -
2 Hb_010866_020 0.1255582964 - - unnamed protein product [Vitis vinifera]
3 Hb_000170_170 0.2010165997 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
4 Hb_087388_010 0.2107125319 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
5 Hb_004308_010 0.214856663 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
6 Hb_020259_020 0.2350964582 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
7 Hb_000347_520 0.2470205465 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
8 Hb_008453_040 0.2554750968 - - PREDICTED: expansin-A11 [Jatropha curcas]
9 Hb_054581_010 0.2565330794 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
10 Hb_000069_290 0.2652697554 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
11 Hb_001199_120 0.2753753176 - - PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
12 Hb_000170_180 0.2804968235 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
13 Hb_000753_270 0.280608038 - - -
14 Hb_027450_020 0.2817722398 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
15 Hb_002641_170 0.2824015566 - - zinc finger protein, putative [Ricinus communis]
16 Hb_009486_110 0.2825029367 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
17 Hb_006469_110 0.2828710771 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
18 Hb_001514_260 0.2883282346 - - -
19 Hb_002309_030 0.2927458908 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
20 Hb_000367_110 0.2991152755 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]

Gene co-expression network

sample Hb_005870_010 Hb_005870_010 Hb_010866_020 Hb_010866_020 Hb_005870_010--Hb_010866_020 Hb_000170_170 Hb_000170_170 Hb_005870_010--Hb_000170_170 Hb_087388_010 Hb_087388_010 Hb_005870_010--Hb_087388_010 Hb_004308_010 Hb_004308_010 Hb_005870_010--Hb_004308_010 Hb_020259_020 Hb_020259_020 Hb_005870_010--Hb_020259_020 Hb_000347_520 Hb_000347_520 Hb_005870_010--Hb_000347_520 Hb_010866_020--Hb_000347_520 Hb_010866_020--Hb_004308_010 Hb_006469_110 Hb_006469_110 Hb_010866_020--Hb_006469_110 Hb_010866_020--Hb_000170_170 Hb_010866_020--Hb_087388_010 Hb_000170_170--Hb_020259_020 Hb_000170_170--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_000170_170--Hb_002309_030 Hb_000170_170--Hb_004308_010 Hb_008453_040 Hb_008453_040 Hb_087388_010--Hb_008453_040 Hb_087388_010--Hb_000347_520 Hb_000170_180 Hb_000170_180 Hb_087388_010--Hb_000170_180 Hb_004032_340 Hb_004032_340 Hb_087388_010--Hb_004032_340 Hb_003333_070 Hb_003333_070 Hb_004308_010--Hb_003333_070 Hb_000577_060 Hb_000577_060 Hb_004308_010--Hb_000577_060 Hb_000753_270 Hb_000753_270 Hb_004308_010--Hb_000753_270 Hb_004308_010--Hb_002309_030 Hb_000188_080 Hb_000188_080 Hb_004308_010--Hb_000188_080 Hb_020259_020--Hb_002309_030 Hb_020259_020--Hb_010866_020 Hb_020259_020--Hb_004308_010 Hb_000181_370 Hb_000181_370 Hb_020259_020--Hb_000181_370 Hb_000347_520--Hb_006469_110 Hb_000347_520--Hb_003333_070 Hb_000347_520--Hb_000188_080 Hb_000367_110 Hb_000367_110 Hb_000347_520--Hb_000367_110 Hb_000347_520--Hb_002309_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.255943 1.23563 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.567861 0 0 0 0

CAGE analysis