Hb_000347_520

Information

Type transcription factor
Description TF Family: AP2
Location Contig347: 477052-480161
Sequence    

Annotation

kegg
ID rcu:RCOM_0652810
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID KDP40705.1
description hypothetical protein JCGZ_24704 [Jatropha curcas]
swissprot
ID Q1PFE1
description AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1
trembl
ID A0A067L8B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24704 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor ail1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_520 0.0 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
2 Hb_010866_020 0.1499643321 - - unnamed protein product [Vitis vinifera]
3 Hb_006469_110 0.1597466728 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
4 Hb_003333_070 0.1880159976 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
5 Hb_000188_080 0.1969003706 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
6 Hb_000367_110 0.2010688771 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
7 Hb_002309_030 0.201580117 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
8 Hb_087388_010 0.2036518388 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
9 Hb_004308_010 0.2046356821 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
10 Hb_051900_020 0.2060342776 - - JHL22C18.7 [Jatropha curcas]
11 Hb_033691_010 0.2070063625 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
12 Hb_041332_010 0.2110740147 - - DNA binding protein, putative [Ricinus communis]
13 Hb_160479_010 0.2125522155 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_000027_280 0.214939961 - - PREDICTED: uncharacterized protein LOC105642051 [Jatropha curcas]
15 Hb_010068_010 0.2178753919 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
16 Hb_002235_330 0.2181320461 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
17 Hb_002267_110 0.223050295 - - -
18 Hb_002641_170 0.2268887004 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000170_180 0.2273774524 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
20 Hb_001514_260 0.2286112364 - - -

Gene co-expression network

sample Hb_000347_520 Hb_000347_520 Hb_010866_020 Hb_010866_020 Hb_000347_520--Hb_010866_020 Hb_006469_110 Hb_006469_110 Hb_000347_520--Hb_006469_110 Hb_003333_070 Hb_003333_070 Hb_000347_520--Hb_003333_070 Hb_000188_080 Hb_000188_080 Hb_000347_520--Hb_000188_080 Hb_000367_110 Hb_000367_110 Hb_000347_520--Hb_000367_110 Hb_002309_030 Hb_002309_030 Hb_000347_520--Hb_002309_030 Hb_005870_010 Hb_005870_010 Hb_010866_020--Hb_005870_010 Hb_004308_010 Hb_004308_010 Hb_010866_020--Hb_004308_010 Hb_010866_020--Hb_006469_110 Hb_000170_170 Hb_000170_170 Hb_010866_020--Hb_000170_170 Hb_087388_010 Hb_087388_010 Hb_010866_020--Hb_087388_010 Hb_006469_110--Hb_002309_030 Hb_122079_010 Hb_122079_010 Hb_006469_110--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_006469_110--Hb_061335_010 Hb_000053_150 Hb_000053_150 Hb_006469_110--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_006469_110--Hb_010812_080 Hb_003333_070--Hb_000188_080 Hb_005015_090 Hb_005015_090 Hb_003333_070--Hb_005015_090 Hb_003333_070--Hb_002309_030 Hb_003333_070--Hb_004308_010 Hb_008535_020 Hb_008535_020 Hb_003333_070--Hb_008535_020 Hb_005914_190 Hb_005914_190 Hb_003333_070--Hb_005914_190 Hb_000188_080--Hb_008535_020 Hb_000325_090 Hb_000325_090 Hb_000188_080--Hb_000325_090 Hb_001247_050 Hb_001247_050 Hb_000188_080--Hb_001247_050 Hb_000188_080--Hb_004308_010 Hb_000566_060 Hb_000566_060 Hb_000188_080--Hb_000566_060 Hb_002641_170 Hb_002641_170 Hb_000367_110--Hb_002641_170 Hb_000367_110--Hb_000188_080 Hb_000367_110--Hb_004308_010 Hb_004218_100 Hb_004218_100 Hb_000367_110--Hb_004218_100 Hb_003988_020 Hb_003988_020 Hb_000367_110--Hb_003988_020 Hb_002309_030--Hb_004308_010 Hb_002309_030--Hb_008535_020 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.051974 0.24925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0262862 0 0 0.00823971 0

CAGE analysis