Hb_009486_110

Information

Type -
Description -
Location Contig9486: 62972-67342
Sequence    

Annotation

kegg
ID rcu:RCOM_0658510
description rac gtpase, putative (EC:3.1.4.12)
nr
ID XP_012083733.1
description PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
swissprot
ID Q6Z7L8
description Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1
trembl
ID A0A067K1H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14659 PE=3 SV=1
Gene Ontology
ID GO:0005622
description rac-like gtp-binding protein rac2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_110 0.0 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
2 Hb_027450_020 0.0017843968 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
3 Hb_006775_050 0.0959568653 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
4 Hb_019863_020 0.1478493705 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
5 Hb_054581_010 0.1526682799 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
6 Hb_000069_290 0.1996969909 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
7 Hb_000753_270 0.2444714313 - - -
8 Hb_070268_010 0.2492538074 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
9 Hb_005870_010 0.2825029367 - - -
10 Hb_000614_310 0.3081103012 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000329_260 0.3351002533 - - hypothetical protein MIMGU_mgv1a016162mg [Erythranthe guttata]
12 Hb_004308_010 0.3368453548 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
13 Hb_020259_020 0.3412292388 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
14 Hb_000577_060 0.3427806962 - - -
15 Hb_000179_160 0.3498806044 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
16 Hb_001199_120 0.3534313236 - - PREDICTED: uncharacterized protein LOC103437171 [Malus domestica]
17 Hb_033870_010 0.3565723679 - - PREDICTED: uncharacterized protein LOC104101109 isoform X1 [Nicotiana tomentosiformis]
18 Hb_007218_030 0.3643516728 - - PREDICTED: uncharacterized protein At4g02000-like [Jatropha curcas]
19 Hb_002299_020 0.3731567056 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000671_180 0.3734947607 - - RING zinc finger protein, putative [Arabidopsis thaliana]

Gene co-expression network

sample Hb_009486_110 Hb_009486_110 Hb_027450_020 Hb_027450_020 Hb_009486_110--Hb_027450_020 Hb_006775_050 Hb_006775_050 Hb_009486_110--Hb_006775_050 Hb_019863_020 Hb_019863_020 Hb_009486_110--Hb_019863_020 Hb_054581_010 Hb_054581_010 Hb_009486_110--Hb_054581_010 Hb_000069_290 Hb_000069_290 Hb_009486_110--Hb_000069_290 Hb_000753_270 Hb_000753_270 Hb_009486_110--Hb_000753_270 Hb_027450_020--Hb_006775_050 Hb_027450_020--Hb_019863_020 Hb_027450_020--Hb_054581_010 Hb_027450_020--Hb_000069_290 Hb_027450_020--Hb_000753_270 Hb_006775_050--Hb_019863_020 Hb_070268_010 Hb_070268_010 Hb_006775_050--Hb_070268_010 Hb_006775_050--Hb_054581_010 Hb_000179_160 Hb_000179_160 Hb_006775_050--Hb_000179_160 Hb_019863_020--Hb_070268_010 Hb_019863_020--Hb_000179_160 Hb_007218_030 Hb_007218_030 Hb_019863_020--Hb_007218_030 Hb_054581_010--Hb_000069_290 Hb_054581_010--Hb_000753_270 Hb_000577_060 Hb_000577_060 Hb_054581_010--Hb_000577_060 Hb_000614_310 Hb_000614_310 Hb_054581_010--Hb_000614_310 Hb_000069_290--Hb_000753_270 Hb_000069_290--Hb_000577_060 Hb_000069_290--Hb_000614_310 Hb_004308_010 Hb_004308_010 Hb_000069_290--Hb_004308_010 Hb_000753_270--Hb_000577_060 Hb_000753_270--Hb_004308_010 Hb_000753_270--Hb_000614_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0815884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0690906 0 0 0 0

CAGE analysis