Hb_002701_090

Information

Type -
Description -
Location Contig2701: 79981-83705
Sequence    

Annotation

kegg
ID rcu:RCOM_0790260
description protein disulfide oxidoreductase, putative
nr
ID XP_006373400.1
description hypothetical protein POPTR_0017s13430g [Populus trichocarpa]
swissprot
ID P39598
description Uncharacterized protein YwbO OS=Bacillus subtilis (strain 168) GN=ywbO PE=4 SV=1
trembl
ID U5FPB8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13430g PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein disulfide

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28321: 79952-83670 , PASA_asmbl_28322: 79939-83637 , PASA_asmbl_28323: 79939-83641
cDNA
(Sanger)
(ID:Location)		 008_E11.ab1: 80416-83637 , 019_N02.ab1: 80168-83641

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002701_090 0.0 - - hypothetical protein POPTR_0017s13430g [Populus trichocarpa]
2 Hb_026527_010 0.137245869 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
3 Hb_001329_180 0.1679645831 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
4 Hb_000920_160 0.1733175998 - - annexin [Manihot esculenta]
5 Hb_002200_070 0.175901792 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
6 Hb_001621_100 0.1765786047 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
7 Hb_000107_350 0.1813234564 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
8 Hb_001922_030 0.1872161238 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
9 Hb_031089_020 0.1916359526 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_003470_110 0.2026827081 - - unnamed protein product [Vitis vinifera]
11 Hb_006736_050 0.2036389307 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
12 Hb_004055_020 0.2042347447 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
13 Hb_020805_140 0.2045619907 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
14 Hb_003462_080 0.2060895643 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_000120_940 0.2077350586 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
16 Hb_084147_010 0.2094260525 - - amino acid transporter, putative [Ricinus communis]
17 Hb_011310_180 0.2118526651 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
18 Hb_001102_160 0.2134494636 - - PREDICTED: galacturonokinase [Jatropha curcas]
19 Hb_000684_220 0.2155690243 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000077_310 0.2157982679 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002701_090 Hb_002701_090 Hb_026527_010 Hb_026527_010 Hb_002701_090--Hb_026527_010 Hb_001329_180 Hb_001329_180 Hb_002701_090--Hb_001329_180 Hb_000920_160 Hb_000920_160 Hb_002701_090--Hb_000920_160 Hb_002200_070 Hb_002200_070 Hb_002701_090--Hb_002200_070 Hb_001621_100 Hb_001621_100 Hb_002701_090--Hb_001621_100 Hb_000107_350 Hb_000107_350 Hb_002701_090--Hb_000107_350 Hb_026527_010--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_026527_010--Hb_000696_070 Hb_003470_110 Hb_003470_110 Hb_026527_010--Hb_003470_110 Hb_020805_140 Hb_020805_140 Hb_026527_010--Hb_020805_140 Hb_002781_050 Hb_002781_050 Hb_026527_010--Hb_002781_050 Hb_000806_130 Hb_000806_130 Hb_001329_180--Hb_000806_130 Hb_001922_030 Hb_001922_030 Hb_001329_180--Hb_001922_030 Hb_000236_190 Hb_000236_190 Hb_001329_180--Hb_000236_190 Hb_030565_100 Hb_030565_100 Hb_001329_180--Hb_030565_100 Hb_000300_420 Hb_000300_420 Hb_001329_180--Hb_000300_420 Hb_000120_940 Hb_000120_940 Hb_000920_160--Hb_000120_940 Hb_000920_160--Hb_001922_030 Hb_031089_020 Hb_031089_020 Hb_000920_160--Hb_031089_020 Hb_002759_070 Hb_002759_070 Hb_000920_160--Hb_002759_070 Hb_000920_160--Hb_001329_180 Hb_000920_160--Hb_026527_010 Hb_002200_070--Hb_001621_100 Hb_000861_100 Hb_000861_100 Hb_002200_070--Hb_000861_100 Hb_002200_070--Hb_031089_020 Hb_003371_070 Hb_003371_070 Hb_002200_070--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_002200_070--Hb_000057_130 Hb_002200_070--Hb_003470_110 Hb_000768_150 Hb_000768_150 Hb_001621_100--Hb_000768_150 Hb_001546_010 Hb_001546_010 Hb_001621_100--Hb_001546_010 Hb_001621_100--Hb_003470_110 Hb_000580_110 Hb_000580_110 Hb_001621_100--Hb_000580_110 Hb_001621_100--Hb_002759_070 Hb_000649_040 Hb_000649_040 Hb_000107_350--Hb_000649_040 Hb_000077_310 Hb_000077_310 Hb_000107_350--Hb_000077_310 Hb_011310_040 Hb_011310_040 Hb_000107_350--Hb_011310_040 Hb_000808_150 Hb_000808_150 Hb_000107_350--Hb_000808_150 Hb_003226_250 Hb_003226_250 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09427 8.22404 24.2319 84.6678 0.0396714 0.83634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9485 3.84832 1.68711 21.5404 50.8731

CAGE analysis