Hb_000120_940

Information

Type -
Description -
Location Contig120: 719030-720310
Sequence    

Annotation

kegg
ID vvi:100854216
description phosphoserine aminotransferase 2, chloroplastic-like
nr
ID XP_012065373.1
description PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q96255
description Phosphoserine aminotransferase 1, chloroplastic OS=Arabidopsis thaliana GN=PSAT1 PE=1 SV=1
trembl
ID A0A067LGT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22377 PE=3 SV=1
Gene Ontology
ID GO:0004648
description phosphoserine aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06231: 715467-718471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_940 0.0 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
2 Hb_000920_160 0.0869817859 - - annexin [Manihot esculenta]
3 Hb_002759_070 0.1325959257 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
4 Hb_005253_020 0.1493091386 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
5 Hb_000463_120 0.1521704633 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
6 Hb_000003_210 0.152868129 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
7 Hb_000297_140 0.1533416179 - - hypothetical protein RCOM_0293450 [Ricinus communis]
8 Hb_001922_030 0.1558358982 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
9 Hb_031089_020 0.1595945374 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_000438_120 0.1629047839 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000529_010 0.1638511837 - - cyclin d, putative [Ricinus communis]
12 Hb_029223_040 0.1659137996 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
13 Hb_000003_110 0.1667433609 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_001329_180 0.1693954574 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
15 Hb_084147_010 0.1710154473 - - amino acid transporter, putative [Ricinus communis]
16 Hb_116647_010 0.1735657503 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000025_160 0.1737352132 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
18 Hb_064546_010 0.1745192334 - - PREDICTED: peroxidase 3 [Jatropha curcas]
19 Hb_161396_010 0.1748408606 - - hypothetical protein F383_26394 [Gossypium arboreum]
20 Hb_061222_010 0.1750879089 - - hypothetical protein RCOM_0012650 [Ricinus communis]

Gene co-expression network

sample Hb_000120_940 Hb_000120_940 Hb_000920_160 Hb_000920_160 Hb_000120_940--Hb_000920_160 Hb_002759_070 Hb_002759_070 Hb_000120_940--Hb_002759_070 Hb_005253_020 Hb_005253_020 Hb_000120_940--Hb_005253_020 Hb_000463_120 Hb_000463_120 Hb_000120_940--Hb_000463_120 Hb_000003_210 Hb_000003_210 Hb_000120_940--Hb_000003_210 Hb_000297_140 Hb_000297_140 Hb_000120_940--Hb_000297_140 Hb_001922_030 Hb_001922_030 Hb_000920_160--Hb_001922_030 Hb_031089_020 Hb_031089_020 Hb_000920_160--Hb_031089_020 Hb_000920_160--Hb_002759_070 Hb_001329_180 Hb_001329_180 Hb_000920_160--Hb_001329_180 Hb_026527_010 Hb_026527_010 Hb_000920_160--Hb_026527_010 Hb_002486_020 Hb_002486_020 Hb_002759_070--Hb_002486_020 Hb_161396_010 Hb_161396_010 Hb_002759_070--Hb_161396_010 Hb_000438_120 Hb_000438_120 Hb_002759_070--Hb_000438_120 Hb_001621_100 Hb_001621_100 Hb_002759_070--Hb_001621_100 Hb_000003_110 Hb_000003_110 Hb_005253_020--Hb_000003_110 Hb_002292_080 Hb_002292_080 Hb_005253_020--Hb_002292_080 Hb_012518_080 Hb_012518_080 Hb_005253_020--Hb_012518_080 Hb_000017_250 Hb_000017_250 Hb_005253_020--Hb_000017_250 Hb_000735_020 Hb_000735_020 Hb_005253_020--Hb_000735_020 Hb_005253_020--Hb_000003_210 Hb_030565_100 Hb_030565_100 Hb_000463_120--Hb_030565_100 Hb_001404_070 Hb_001404_070 Hb_000463_120--Hb_001404_070 Hb_002203_020 Hb_002203_020 Hb_000463_120--Hb_002203_020 Hb_029223_040 Hb_029223_040 Hb_000463_120--Hb_029223_040 Hb_000077_100 Hb_000077_100 Hb_000463_120--Hb_000077_100 Hb_009122_010 Hb_009122_010 Hb_000463_120--Hb_009122_010 Hb_132840_150 Hb_132840_150 Hb_000003_210--Hb_132840_150 Hb_003583_010 Hb_003583_010 Hb_000003_210--Hb_003583_010 Hb_000190_170 Hb_000190_170 Hb_000003_210--Hb_000190_170 Hb_001159_230 Hb_001159_230 Hb_000003_210--Hb_001159_230 Hb_007811_020 Hb_007811_020 Hb_000003_210--Hb_007811_020 Hb_000820_110 Hb_000820_110 Hb_000297_140--Hb_000820_110 Hb_006002_050 Hb_006002_050 Hb_000297_140--Hb_006002_050 Hb_000297_140--Hb_030565_100 Hb_000997_080 Hb_000997_080 Hb_000297_140--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000297_140--Hb_000011_280 Hb_007574_040 Hb_007574_040 Hb_000297_140--Hb_007574_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.316576 0.800797 12.1609 30.1721 0.208952 0.10367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.55263 2.62816 0.661319 6.92395 13.2468

CAGE analysis