Hb_000340_200

Information

Type -
Description -
Location Contig340: 191152-191811
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29430g
description POPTRDRAFT_753115; hypothetical protein
nr
ID XP_012092301.1
description PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPQ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35541: 191411-191976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_200 0.0 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
2 Hb_000933_170 0.1990818609 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
3 Hb_012395_120 0.2222925237 - - -
4 Hb_024758_030 0.2288797676 - - hypothetical protein JCGZ_16050 [Jatropha curcas]
5 Hb_001357_050 0.2317510813 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12-like [Jatropha curcas]
6 Hb_000003_200 0.2350785971 - - hypothetical protein TRIUR3_35397 [Triticum urartu]
7 Hb_000417_400 0.235339636 - - PREDICTED: ubiquitin domain-containing protein 1-like isoform X1 [Jatropha curcas]
8 Hb_064546_010 0.2367914676 - - PREDICTED: peroxidase 3 [Jatropha curcas]
9 Hb_000270_100 0.2383131474 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
10 Hb_000742_220 0.2392473928 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_000103_330 0.2398683482 - - PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]
12 Hb_006370_050 0.2402177544 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
13 Hb_000879_170 0.2414049144 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
14 Hb_002701_090 0.2418897129 - - hypothetical protein POPTR_0017s13430g [Populus trichocarpa]
15 Hb_000926_050 0.2428838921 - - PREDICTED: vinorine synthase-like [Populus euphratica]
16 Hb_000932_050 0.2433768921 - - annexin [Manihot esculenta]
17 Hb_111528_010 0.2435653905 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
18 Hb_004710_010 0.2450702431 - - hypothetical protein EUGRSUZ_D010351, partial [Eucalyptus grandis]
19 Hb_000120_940 0.2451783335 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
20 Hb_000866_180 0.2468064038 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]

Gene co-expression network

sample Hb_000340_200 Hb_000340_200 Hb_000933_170 Hb_000933_170 Hb_000340_200--Hb_000933_170 Hb_012395_120 Hb_012395_120 Hb_000340_200--Hb_012395_120 Hb_024758_030 Hb_024758_030 Hb_000340_200--Hb_024758_030 Hb_001357_050 Hb_001357_050 Hb_000340_200--Hb_001357_050 Hb_000003_200 Hb_000003_200 Hb_000340_200--Hb_000003_200 Hb_000417_400 Hb_000417_400 Hb_000340_200--Hb_000417_400 Hb_001269_660 Hb_001269_660 Hb_000933_170--Hb_001269_660 Hb_000910_060 Hb_000910_060 Hb_000933_170--Hb_000910_060 Hb_002518_230 Hb_002518_230 Hb_000933_170--Hb_002518_230 Hb_001143_210 Hb_001143_210 Hb_000933_170--Hb_001143_210 Hb_149507_010 Hb_149507_010 Hb_000933_170--Hb_149507_010 Hb_012395_060 Hb_012395_060 Hb_000933_170--Hb_012395_060 Hb_000926_050 Hb_000926_050 Hb_012395_120--Hb_000926_050 Hb_168561_010 Hb_168561_010 Hb_012395_120--Hb_168561_010 Hb_006499_020 Hb_006499_020 Hb_012395_120--Hb_006499_020 Hb_000639_010 Hb_000639_010 Hb_012395_120--Hb_000639_010 Hb_000668_050 Hb_000668_050 Hb_012395_120--Hb_000668_050 Hb_003052_020 Hb_003052_020 Hb_012395_120--Hb_003052_020 Hb_004918_010 Hb_004918_010 Hb_024758_030--Hb_004918_010 Hb_000307_040 Hb_000307_040 Hb_024758_030--Hb_000307_040 Hb_000347_100 Hb_000347_100 Hb_024758_030--Hb_000347_100 Hb_017043_040 Hb_017043_040 Hb_024758_030--Hb_017043_040 Hb_007885_020 Hb_007885_020 Hb_024758_030--Hb_007885_020 Hb_024758_030--Hb_000639_010 Hb_004218_200 Hb_004218_200 Hb_001357_050--Hb_004218_200 Hb_064546_010 Hb_064546_010 Hb_001357_050--Hb_064546_010 Hb_000417_050 Hb_000417_050 Hb_001357_050--Hb_000417_050 Hb_003580_050 Hb_003580_050 Hb_001357_050--Hb_003580_050 Hb_004696_010 Hb_004696_010 Hb_001357_050--Hb_004696_010 Hb_000012_330 Hb_000012_330 Hb_001357_050--Hb_000012_330 Hb_003001_050 Hb_003001_050 Hb_000003_200--Hb_003001_050 Hb_002701_090 Hb_002701_090 Hb_000003_200--Hb_002701_090 Hb_001922_030 Hb_001922_030 Hb_000003_200--Hb_001922_030 Hb_001329_180 Hb_001329_180 Hb_000003_200--Hb_001329_180 Hb_004032_340 Hb_004032_340 Hb_000003_200--Hb_004032_340 Hb_003052_080 Hb_003052_080 Hb_000417_400--Hb_003052_080 Hb_113766_010 Hb_113766_010 Hb_000417_400--Hb_113766_010 Hb_000417_400--Hb_001143_210 Hb_002495_030 Hb_002495_030 Hb_000417_400--Hb_002495_030 Hb_001404_070 Hb_001404_070 Hb_000417_400--Hb_001404_070 Hb_000417_400--Hb_000933_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123994 0 0.356302 0.752364 0.0356648 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0878946 0 0 0.225503 0.54242

CAGE analysis