Hb_000926_050

Information

Type -
Description -
Location Contig926: 67531-68400
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01190g
description POPTRDRAFT_818939; hypothetical protein
nr
ID XP_011008627.1
description PREDICTED: vinorine synthase-like [Populus euphratica]
swissprot
ID Q94FT4
description Salutaridinol 7-O-acetyltransferase OS=Papaver somniferum GN=SALAT PE=1 SV=1
trembl
ID B9HCG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01190g PE=4 SV=1
Gene Ontology
ID GO:0016747
description vinorine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_050 0.0 - - PREDICTED: vinorine synthase-like [Populus euphratica]
2 Hb_004096_200 0.1206938926 - - PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]
3 Hb_119443_010 0.1703616219 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
4 Hb_012395_120 0.1798618231 - - -
5 Hb_017043_040 0.1836267358 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_176680_010 0.1853227742 - - hypothetical protein JCGZ_22787 [Jatropha curcas]
7 Hb_113379_010 0.1888233074 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
8 Hb_006370_050 0.1955760346 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
9 Hb_126933_010 0.1968094754 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
10 Hb_002001_030 0.2046647863 - - Plasma membrane ATPase 4 [Gossypium arboreum]
11 Hb_039435_010 0.2047940699 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
12 Hb_004116_050 0.2050170707 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
13 Hb_162174_010 0.2050527 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
14 Hb_005181_190 0.2059191741 - - PREDICTED: uncharacterized protein LOC105643550 [Jatropha curcas]
15 Hb_067558_010 0.2061938577 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_012655_010 0.2070734836 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
17 Hb_003052_020 0.2071117027 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001384_040 0.2078428032 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_000621_030 0.2088671002 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
20 Hb_006053_020 0.2093652024 - - CAP [Theobroma cacao]

Gene co-expression network

sample Hb_000926_050 Hb_000926_050 Hb_004096_200 Hb_004096_200 Hb_000926_050--Hb_004096_200 Hb_119443_010 Hb_119443_010 Hb_000926_050--Hb_119443_010 Hb_012395_120 Hb_012395_120 Hb_000926_050--Hb_012395_120 Hb_017043_040 Hb_017043_040 Hb_000926_050--Hb_017043_040 Hb_176680_010 Hb_176680_010 Hb_000926_050--Hb_176680_010 Hb_113379_010 Hb_113379_010 Hb_000926_050--Hb_113379_010 Hb_004096_200--Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_004096_200--Hb_001384_040 Hb_005155_030 Hb_005155_030 Hb_004096_200--Hb_005155_030 Hb_002740_060 Hb_002740_060 Hb_004096_200--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_004096_200--Hb_011618_010 Hb_119443_010--Hb_176680_010 Hb_119443_010--Hb_017043_040 Hb_039435_010 Hb_039435_010 Hb_119443_010--Hb_039435_010 Hb_006053_020 Hb_006053_020 Hb_119443_010--Hb_006053_020 Hb_119443_010--Hb_005155_030 Hb_119443_010--Hb_113379_010 Hb_168561_010 Hb_168561_010 Hb_012395_120--Hb_168561_010 Hb_006499_020 Hb_006499_020 Hb_012395_120--Hb_006499_020 Hb_000639_010 Hb_000639_010 Hb_012395_120--Hb_000639_010 Hb_000668_050 Hb_000668_050 Hb_012395_120--Hb_000668_050 Hb_003052_020 Hb_003052_020 Hb_012395_120--Hb_003052_020 Hb_012655_010 Hb_012655_010 Hb_017043_040--Hb_012655_010 Hb_162174_010 Hb_162174_010 Hb_017043_040--Hb_162174_010 Hb_000109_140 Hb_000109_140 Hb_017043_040--Hb_000109_140 Hb_005731_010 Hb_005731_010 Hb_017043_040--Hb_005731_010 Hb_000941_110 Hb_000941_110 Hb_017043_040--Hb_000941_110 Hb_001409_080 Hb_001409_080 Hb_176680_010--Hb_001409_080 Hb_006938_060 Hb_006938_060 Hb_176680_010--Hb_006938_060 Hb_067558_010 Hb_067558_010 Hb_176680_010--Hb_067558_010 Hb_012539_080 Hb_012539_080 Hb_176680_010--Hb_012539_080 Hb_040718_010 Hb_040718_010 Hb_176680_010--Hb_040718_010 Hb_113379_010--Hb_001384_040 Hb_113379_010--Hb_002740_060 Hb_113379_010--Hb_011618_010 Hb_113379_010--Hb_012539_080 Hb_113379_010--Hb_005155_030 Hb_114893_010 Hb_114893_010 Hb_113379_010--Hb_114893_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0545506 0 0.259761 0.205287 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.124585 0.377125

CAGE analysis