Hb_012395_120

Information

Type -
Description -
Location Contig12395: 53136-53504
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07266: 50999-52753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_120 0.0 - - -
2 Hb_000926_050 0.1798618231 - - PREDICTED: vinorine synthase-like [Populus euphratica]
3 Hb_168561_010 0.1978753204 - - PREDICTED: notchless protein homolog [Jatropha curcas]
4 Hb_006499_020 0.2007369373 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
5 Hb_000639_010 0.2034936843 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
6 Hb_000668_050 0.2134602413 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_003052_020 0.2174312757 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_007101_140 0.2178232697 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
9 Hb_000340_200 0.2222925237 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
10 Hb_116190_010 0.2236315498 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
11 Hb_007017_100 0.2261385704 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
12 Hb_000152_120 0.2276770148 - - alpha-l-fucosidase, putative [Ricinus communis]
13 Hb_000594_140 0.2296112556 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
14 Hb_000951_090 0.2325997052 - - Oligopeptide transporter, putative [Ricinus communis]
15 Hb_000226_110 0.2330675762 - - -
16 Hb_017043_040 0.235798125 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_000337_030 0.2368771239 - - amino acid transporter, putative [Ricinus communis]
18 Hb_000635_110 0.2372667111 - - ELMO domain-containing protein, putative [Ricinus communis]
19 Hb_003124_050 0.2381946127 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
20 Hb_004162_140 0.2389204255 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]

Gene co-expression network

sample Hb_012395_120 Hb_012395_120 Hb_000926_050 Hb_000926_050 Hb_012395_120--Hb_000926_050 Hb_168561_010 Hb_168561_010 Hb_012395_120--Hb_168561_010 Hb_006499_020 Hb_006499_020 Hb_012395_120--Hb_006499_020 Hb_000639_010 Hb_000639_010 Hb_012395_120--Hb_000639_010 Hb_000668_050 Hb_000668_050 Hb_012395_120--Hb_000668_050 Hb_003052_020 Hb_003052_020 Hb_012395_120--Hb_003052_020 Hb_004096_200 Hb_004096_200 Hb_000926_050--Hb_004096_200 Hb_119443_010 Hb_119443_010 Hb_000926_050--Hb_119443_010 Hb_017043_040 Hb_017043_040 Hb_000926_050--Hb_017043_040 Hb_176680_010 Hb_176680_010 Hb_000926_050--Hb_176680_010 Hb_113379_010 Hb_113379_010 Hb_000926_050--Hb_113379_010 Hb_168561_010--Hb_006499_020 Hb_168561_010--Hb_000639_010 Hb_004162_140 Hb_004162_140 Hb_168561_010--Hb_004162_140 Hb_116190_010 Hb_116190_010 Hb_168561_010--Hb_116190_010 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_007101_140 Hb_007101_140 Hb_168561_010--Hb_007101_140 Hb_006499_020--Hb_116190_010 Hb_000226_110 Hb_000226_110 Hb_006499_020--Hb_000226_110 Hb_003861_090 Hb_003861_090 Hb_006499_020--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_006499_020--Hb_000373_060 Hb_006499_020--Hb_000639_010 Hb_000639_010--Hb_000635_100 Hb_001277_010 Hb_001277_010 Hb_000639_010--Hb_001277_010 Hb_000639_010--Hb_007101_140 Hb_032572_010 Hb_032572_010 Hb_000639_010--Hb_032572_010 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_003189_010 Hb_003189_010 Hb_000668_050--Hb_003189_010 Hb_000714_060 Hb_000714_060 Hb_000668_050--Hb_000714_060 Hb_003754_020 Hb_003754_020 Hb_000668_050--Hb_003754_020 Hb_000951_090 Hb_000951_090 Hb_000668_050--Hb_000951_090 Hb_004374_160 Hb_004374_160 Hb_003052_020--Hb_004374_160 Hb_143766_070 Hb_143766_070 Hb_003052_020--Hb_143766_070 Hb_001488_350 Hb_001488_350 Hb_003052_020--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_003052_020--Hb_039435_010 Hb_003052_020--Hb_000926_050 Hb_004881_070 Hb_004881_070 Hb_003052_020--Hb_004881_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.098284 0 0.331626 0.432142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.320819 0.313571

CAGE analysis