Hb_003052_020

Information

Type -
Description -
Location Contig3052: 9391-19385
Sequence    

Annotation

kegg
ID rcu:RCOM_1465120
description rubisco subunit binding-protein beta subunit, rubb, putative
nr
ID XP_012080491.1
description PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9C667
description Chaperonin 60 subunit beta 4, chloroplastic OS=Arabidopsis thaliana GN=CPN60B4 PE=1 SV=1
trembl
ID A0A067KHV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11805 PE=3 SV=1
Gene Ontology
ID GO:0044238
description chaperonin-60 beta4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32174: 17965-18267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003052_020 0.0 - - PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_004374_160 0.172062258 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
3 Hb_143766_070 0.17217 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
4 Hb_001488_350 0.2057357505 - - conserved hypothetical protein [Ricinus communis]
5 Hb_039435_010 0.2063758364 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
6 Hb_000926_050 0.2071117027 - - PREDICTED: vinorine synthase-like [Populus euphratica]
7 Hb_004881_070 0.2156877763 - - ATP binding protein, putative [Ricinus communis]
8 Hb_012395_120 0.2174312757 - - -
9 Hb_162174_010 0.2183204299 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_000057_100 0.2211831248 - - Peroxidase 57 precursor, putative [Ricinus communis]
11 Hb_002949_020 0.2219950042 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
12 Hb_005839_090 0.2222587664 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g56230 isoform X1 [Populus euphratica]
13 Hb_017043_040 0.2291948 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_000621_030 0.2308361712 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
15 Hb_005493_010 0.234793379 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000032_610 0.2351480154 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
17 Hb_003540_100 0.236358296 - - ATP-binding cassette transporter, putative [Ricinus communis]
18 Hb_048476_140 0.2378863303 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
19 Hb_000061_400 0.2381036458 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_000347_100 0.2392251694 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]

Gene co-expression network

sample Hb_003052_020 Hb_003052_020 Hb_004374_160 Hb_004374_160 Hb_003052_020--Hb_004374_160 Hb_143766_070 Hb_143766_070 Hb_003052_020--Hb_143766_070 Hb_001488_350 Hb_001488_350 Hb_003052_020--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_003052_020--Hb_039435_010 Hb_000926_050 Hb_000926_050 Hb_003052_020--Hb_000926_050 Hb_004881_070 Hb_004881_070 Hb_003052_020--Hb_004881_070 Hb_004374_160--Hb_001488_350 Hb_004374_160--Hb_039435_010 Hb_000621_030 Hb_000621_030 Hb_004374_160--Hb_000621_030 Hb_004374_160--Hb_004881_070 Hb_002817_050 Hb_002817_050 Hb_004374_160--Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_004374_160--Hb_005493_010 Hb_000057_100 Hb_000057_100 Hb_143766_070--Hb_000057_100 Hb_143766_070--Hb_004881_070 Hb_143766_070--Hb_004374_160 Hb_000635_100 Hb_000635_100 Hb_143766_070--Hb_000635_100 Hb_000639_010 Hb_000639_010 Hb_143766_070--Hb_000639_010 Hb_000181_220 Hb_000181_220 Hb_001488_350--Hb_000181_220 Hb_001488_350--Hb_039435_010 Hb_000416_090 Hb_000416_090 Hb_001488_350--Hb_000416_090 Hb_001488_350--Hb_000621_030 Hb_001278_090 Hb_001278_090 Hb_001488_350--Hb_001278_090 Hb_024570_030 Hb_024570_030 Hb_039435_010--Hb_024570_030 Hb_004116_050 Hb_004116_050 Hb_039435_010--Hb_004116_050 Hb_119443_010 Hb_119443_010 Hb_039435_010--Hb_119443_010 Hb_001244_070 Hb_001244_070 Hb_039435_010--Hb_001244_070 Hb_004096_200 Hb_004096_200 Hb_000926_050--Hb_004096_200 Hb_000926_050--Hb_119443_010 Hb_012395_120 Hb_012395_120 Hb_000926_050--Hb_012395_120 Hb_017043_040 Hb_017043_040 Hb_000926_050--Hb_017043_040 Hb_176680_010 Hb_176680_010 Hb_000926_050--Hb_176680_010 Hb_113379_010 Hb_113379_010 Hb_000926_050--Hb_113379_010 Hb_162174_010 Hb_162174_010 Hb_004881_070--Hb_162174_010 Hb_004881_070--Hb_000621_030 Hb_001541_130 Hb_001541_130 Hb_004881_070--Hb_001541_130 Hb_001516_010 Hb_001516_010 Hb_004881_070--Hb_001516_010 Hb_000816_240 Hb_000816_240 Hb_004881_070--Hb_000816_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.030575 0 0.234602 0.216717 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0553574 0 0.112159 0.221525

CAGE analysis