Hb_004096_200

Information

Type -
Description -
Location Contig4096: 192090-193882
Sequence    

Annotation

kegg
ID egr:104422090
description GDT1-like protein 5
nr
ID XP_010032622.1
description PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]
swissprot
ID Q9C6M1
description GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1
trembl
ID A0A059AEH2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01475 PE=4 SV=1
Gene Ontology
ID GO:0016020
description gdt1-like protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_200 0.0 - - PREDICTED: GDT1-like protein 5 [Eucalyptus grandis]
2 Hb_113379_010 0.1111799997 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
3 Hb_000926_050 0.1206938926 - - PREDICTED: vinorine synthase-like [Populus euphratica]
4 Hb_001384_040 0.1320301398 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
5 Hb_005155_030 0.1356875744 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_002740_060 0.1410551644 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
7 Hb_011618_010 0.1415540923 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
8 Hb_008253_050 0.1438914848 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
9 Hb_001104_220 0.1463145203 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
10 Hb_005622_040 0.1468768691 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
11 Hb_041139_010 0.1500014528 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
12 Hb_012539_080 0.1561661772 - - Polyprotein, putative [Solanum demissum]
13 Hb_097783_030 0.1569048638 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
14 Hb_119443_010 0.1590508941 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
15 Hb_002835_050 0.1590836266 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
16 Hb_002001_030 0.1627905991 - - Plasma membrane ATPase 4 [Gossypium arboreum]
17 Hb_000907_130 0.1639593543 - - -
18 Hb_000265_030 0.1684187233 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
19 Hb_005348_050 0.1707699831 - - beta-galactosidase, putative [Ricinus communis]
20 Hb_114893_010 0.1708785645 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004096_200 Hb_004096_200 Hb_113379_010 Hb_113379_010 Hb_004096_200--Hb_113379_010 Hb_000926_050 Hb_000926_050 Hb_004096_200--Hb_000926_050 Hb_001384_040 Hb_001384_040 Hb_004096_200--Hb_001384_040 Hb_005155_030 Hb_005155_030 Hb_004096_200--Hb_005155_030 Hb_002740_060 Hb_002740_060 Hb_004096_200--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_004096_200--Hb_011618_010 Hb_113379_010--Hb_001384_040 Hb_113379_010--Hb_002740_060 Hb_113379_010--Hb_011618_010 Hb_012539_080 Hb_012539_080 Hb_113379_010--Hb_012539_080 Hb_113379_010--Hb_005155_030 Hb_114893_010 Hb_114893_010 Hb_113379_010--Hb_114893_010 Hb_119443_010 Hb_119443_010 Hb_000926_050--Hb_119443_010 Hb_012395_120 Hb_012395_120 Hb_000926_050--Hb_012395_120 Hb_017043_040 Hb_017043_040 Hb_000926_050--Hb_017043_040 Hb_176680_010 Hb_176680_010 Hb_000926_050--Hb_176680_010 Hb_000926_050--Hb_113379_010 Hb_001384_040--Hb_011618_010 Hb_001384_040--Hb_002740_060 Hb_008253_050 Hb_008253_050 Hb_001384_040--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001384_040--Hb_041139_010 Hb_002001_030 Hb_002001_030 Hb_001384_040--Hb_002001_030 Hb_097783_030 Hb_097783_030 Hb_005155_030--Hb_097783_030 Hb_002835_050 Hb_002835_050 Hb_005155_030--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_005155_030--Hb_000907_130 Hb_003030_050 Hb_003030_050 Hb_005155_030--Hb_003030_050 Hb_005155_030--Hb_002740_060 Hb_004896_030 Hb_004896_030 Hb_002740_060--Hb_004896_030 Hb_000265_030 Hb_000265_030 Hb_002740_060--Hb_000265_030 Hb_005622_040 Hb_005622_040 Hb_002740_060--Hb_005622_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110 Hb_011618_010--Hb_041139_010 Hb_011618_010--Hb_008253_050 Hb_005348_050 Hb_005348_050 Hb_011618_010--Hb_005348_050 Hb_001894_100 Hb_001894_100 Hb_011618_010--Hb_001894_100 Hb_000589_410 Hb_000589_410 Hb_011618_010--Hb_000589_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0445481 0 0.336905 0.374605 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.182644 0.88696

CAGE analysis