Hb_000395_250

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig395: 237464-238843
Sequence    

Annotation

kegg
ID cic:CICLE_v10008690mg
description hypothetical protein
nr
ID XP_012077373.1
description PREDICTED: GATA transcription factor 12 [Jatropha curcas]
swissprot
ID P69781
description GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2 SV=1
trembl
ID A0A067KQS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07730 PE=4 SV=1
Gene Ontology
ID GO:0005634
description gata transcription factor 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39529: 237939-238517 , PASA_asmbl_39530: 238713-238865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000395_250 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
2 Hb_000392_470 0.083480965 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004128_170 0.0984227843 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
4 Hb_002042_210 0.1026758591 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
5 Hb_006291_050 0.1035271117 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_000099_120 0.1052180895 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
7 Hb_044478_010 0.1060884913 - - plastoquinol-plastocyanin reductase, putative [Ricinus communis]
8 Hb_131466_010 0.1123108685 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_002387_010 0.115232402 - - PREDICTED: protein STAY-GREEN LIKE, chloroplastic [Jatropha curcas]
10 Hb_002805_280 0.1170653166 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
11 Hb_005111_040 0.1183479736 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
12 Hb_001007_070 0.1193175975 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
13 Hb_004338_050 0.1198656673 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
14 Hb_008195_090 0.1206179495 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001999_230 0.1208376547 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
16 Hb_001564_120 0.1214158159 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
17 Hb_000307_100 0.1223185792 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
18 Hb_006573_240 0.1233328597 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
19 Hb_000098_040 0.1234307928 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
20 Hb_003033_020 0.1246493365 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_000395_250 Hb_000395_250 Hb_000392_470 Hb_000392_470 Hb_000395_250--Hb_000392_470 Hb_004128_170 Hb_004128_170 Hb_000395_250--Hb_004128_170 Hb_002042_210 Hb_002042_210 Hb_000395_250--Hb_002042_210 Hb_006291_050 Hb_006291_050 Hb_000395_250--Hb_006291_050 Hb_000099_120 Hb_000099_120 Hb_000395_250--Hb_000099_120 Hb_044478_010 Hb_044478_010 Hb_000395_250--Hb_044478_010 Hb_000392_470--Hb_000099_120 Hb_001564_120 Hb_001564_120 Hb_000392_470--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000392_470--Hb_004338_050 Hb_001999_230 Hb_001999_230 Hb_000392_470--Hb_001999_230 Hb_001007_070 Hb_001007_070 Hb_000392_470--Hb_001007_070 Hb_000497_050 Hb_000497_050 Hb_000392_470--Hb_000497_050 Hb_004128_170--Hb_001007_070 Hb_002003_130 Hb_002003_130 Hb_004128_170--Hb_002003_130 Hb_004128_170--Hb_000099_120 Hb_005694_120 Hb_005694_120 Hb_004128_170--Hb_005694_120 Hb_000098_040 Hb_000098_040 Hb_004128_170--Hb_000098_040 Hb_005111_040 Hb_005111_040 Hb_004128_170--Hb_005111_040 Hb_131466_010 Hb_131466_010 Hb_002042_210--Hb_131466_010 Hb_002042_210--Hb_044478_010 Hb_002042_210--Hb_006291_050 Hb_002805_280 Hb_002805_280 Hb_002042_210--Hb_002805_280 Hb_003033_020 Hb_003033_020 Hb_002042_210--Hb_003033_020 Hb_002042_210--Hb_005111_040 Hb_006291_050--Hb_005111_040 Hb_006291_050--Hb_131466_010 Hb_009193_070 Hb_009193_070 Hb_006291_050--Hb_009193_070 Hb_006573_240 Hb_006573_240 Hb_006291_050--Hb_006573_240 Hb_006291_050--Hb_044478_010 Hb_000099_120--Hb_001007_070 Hb_000099_120--Hb_001999_230 Hb_000099_120--Hb_001564_120 Hb_000099_120--Hb_004338_050 Hb_000254_130 Hb_000254_130 Hb_000099_120--Hb_000254_130 Hb_153258_040 Hb_153258_040 Hb_044478_010--Hb_153258_040 Hb_044478_010--Hb_131466_010 Hb_001946_120 Hb_001946_120 Hb_044478_010--Hb_001946_120 Hb_044478_010--Hb_005111_040 Hb_044478_010--Hb_001999_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0582889 0.142403 1.62728 1.48812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133272 0 0 0.0841101 4.60776

CAGE analysis