Hb_004128_170

Information

Type -
Description -
Location Contig4128: 139816-140676
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08350g
description POPTRDRAFT_576624; hypothetical protein
nr
ID XP_002322843.2
description hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
swissprot
ID Q8GXF8
description E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana GN=SGR9 PE=1 SV=1
trembl
ID B9IIX9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08350g PE=4 SV=2
Gene Ontology
ID GO:0009501
description e3 ubiquitin-protein ligase amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004128_170 0.0 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
2 Hb_001007_070 0.0789921304 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
3 Hb_002003_130 0.0854636016 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
4 Hb_000099_120 0.0857971724 - - PREDICTED: GDT1-like protein 1, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_005694_120 0.0871323324 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
6 Hb_000098_040 0.0887830841 - - Ferredoxin-2, chloroplast precursor, putative [Ricinus communis]
7 Hb_005111_040 0.08929996 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
8 Hb_006291_050 0.0899924624 - - PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_005054_120 0.0939756553 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
10 Hb_000329_430 0.0940400065 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE10 [Jatropha curcas]
11 Hb_000307_100 0.0942428175 - - Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
12 Hb_009193_070 0.0951776926 - - fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis thaliana]
13 Hb_000826_010 0.0956794899 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001564_120 0.0973350702 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Populus euphratica]
15 Hb_002701_250 0.0973549629 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_000482_180 0.0978482972 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
17 Hb_001999_230 0.0978680812 - - PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas]
18 Hb_002042_210 0.0981670632 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
19 Hb_000395_250 0.0984227843 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12 [Jatropha curcas]
20 Hb_000392_470 0.1006328148 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004128_170 Hb_004128_170 Hb_001007_070 Hb_001007_070 Hb_004128_170--Hb_001007_070 Hb_002003_130 Hb_002003_130 Hb_004128_170--Hb_002003_130 Hb_000099_120 Hb_000099_120 Hb_004128_170--Hb_000099_120 Hb_005694_120 Hb_005694_120 Hb_004128_170--Hb_005694_120 Hb_000098_040 Hb_000098_040 Hb_004128_170--Hb_000098_040 Hb_005111_040 Hb_005111_040 Hb_004128_170--Hb_005111_040 Hb_001999_230 Hb_001999_230 Hb_001007_070--Hb_001999_230 Hb_001007_070--Hb_000099_120 Hb_005054_120 Hb_005054_120 Hb_001007_070--Hb_005054_120 Hb_002259_090 Hb_002259_090 Hb_001007_070--Hb_002259_090 Hb_009193_070 Hb_009193_070 Hb_001007_070--Hb_009193_070 Hb_000254_130 Hb_000254_130 Hb_001007_070--Hb_000254_130 Hb_001584_210 Hb_001584_210 Hb_002003_130--Hb_001584_210 Hb_007044_270 Hb_007044_270 Hb_002003_130--Hb_007044_270 Hb_000077_380 Hb_000077_380 Hb_002003_130--Hb_000077_380 Hb_005063_060 Hb_005063_060 Hb_002003_130--Hb_005063_060 Hb_002003_130--Hb_000098_040 Hb_000099_120--Hb_001999_230 Hb_000392_470 Hb_000392_470 Hb_000099_120--Hb_000392_470 Hb_001564_120 Hb_001564_120 Hb_000099_120--Hb_001564_120 Hb_004338_050 Hb_004338_050 Hb_000099_120--Hb_004338_050 Hb_000099_120--Hb_000254_130 Hb_001946_120 Hb_001946_120 Hb_005694_120--Hb_001946_120 Hb_000847_030 Hb_000847_030 Hb_005694_120--Hb_000847_030 Hb_005694_120--Hb_001007_070 Hb_005694_120--Hb_005111_040 Hb_044478_010 Hb_044478_010 Hb_005694_120--Hb_044478_010 Hb_000984_160 Hb_000984_160 Hb_005694_120--Hb_000984_160 Hb_000352_230 Hb_000352_230 Hb_000098_040--Hb_000352_230 Hb_000307_100 Hb_000307_100 Hb_000098_040--Hb_000307_100 Hb_000098_040--Hb_001564_120 Hb_000329_430 Hb_000329_430 Hb_000098_040--Hb_000329_430 Hb_009771_090 Hb_009771_090 Hb_000098_040--Hb_009771_090 Hb_002809_030 Hb_002809_030 Hb_000098_040--Hb_002809_030 Hb_006291_050 Hb_006291_050 Hb_005111_040--Hb_006291_050 Hb_000482_180 Hb_000482_180 Hb_005111_040--Hb_000482_180 Hb_005111_040--Hb_001007_070 Hb_005111_040--Hb_009193_070 Hb_131466_010 Hb_131466_010 Hb_005111_040--Hb_131466_010 Hb_005111_040--Hb_044478_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19355 2.88075 13.1225 12.216 0 0.164313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.367715 0.0963868 0.0877347 0.389203 39.3562

CAGE analysis