Hb_111528_010

Information

Type -
Description -
Location Contig111528: 1023-1837
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19480g
description POPTRDRAFT_416119; hypothetical protein
nr
ID XP_012078526.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID A0A067KK10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13145 PE=3 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase yoda-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111528_010 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
2 Hb_000866_180 0.2334868418 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
3 Hb_000118_090 0.2379779091 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
4 Hb_009692_040 0.2379903774 - - PREDICTED: peptide chain release factor PrfB3, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001597_020 0.2380087675 - - PREDICTED: uncharacterized protein LOC105629846 isoform X2 [Jatropha curcas]
6 Hb_003768_020 0.2381204957 - - PREDICTED: uncharacterized protein LOC105644157 [Jatropha curcas]
7 Hb_000340_200 0.2435653905 - - PREDICTED: uncharacterized protein LOC105650039 [Jatropha curcas]
8 Hb_032631_030 0.2491374895 - - phosphatidic acid phosphatase, putative [Ricinus communis]
9 Hb_014361_030 0.2549574245 - - hypothetical protein POPTR_0005s18860g [Populus trichocarpa]
10 Hb_000035_340 0.2625745286 - - conserved hypothetical protein [Ricinus communis]
11 Hb_188063_030 0.2651159375 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
12 Hb_172426_060 0.2652548198 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
13 Hb_000190_230 0.2653667376 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
14 Hb_011519_050 0.2663762426 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
15 Hb_002475_060 0.2667027155 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
16 Hb_002235_070 0.2672481861 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
17 Hb_000373_200 0.268239815 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Populus euphratica]
18 Hb_000926_050 0.2707826818 - - PREDICTED: vinorine synthase-like [Populus euphratica]
19 Hb_010721_020 0.2715446599 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
20 Hb_015141_010 0.2725163049 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_111528_010 Hb_111528_010 Hb_000866_180 Hb_000866_180 Hb_111528_010--Hb_000866_180 Hb_000118_090 Hb_000118_090 Hb_111528_010--Hb_000118_090 Hb_009692_040 Hb_009692_040 Hb_111528_010--Hb_009692_040 Hb_001597_020 Hb_001597_020 Hb_111528_010--Hb_001597_020 Hb_003768_020 Hb_003768_020 Hb_111528_010--Hb_003768_020 Hb_000340_200 Hb_000340_200 Hb_111528_010--Hb_000340_200 Hb_101517_010 Hb_101517_010 Hb_000866_180--Hb_101517_010 Hb_002284_270 Hb_002284_270 Hb_000866_180--Hb_002284_270 Hb_004096_200 Hb_004096_200 Hb_000866_180--Hb_004096_200 Hb_015141_010 Hb_015141_010 Hb_000866_180--Hb_015141_010 Hb_000866_180--Hb_000340_200 Hb_010721_020 Hb_010721_020 Hb_000118_090--Hb_010721_020 Hb_011649_010 Hb_011649_010 Hb_000118_090--Hb_011649_010 Hb_000193_220 Hb_000193_220 Hb_000118_090--Hb_000193_220 Hb_000045_050 Hb_000045_050 Hb_000118_090--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000118_090--Hb_071079_020 Hb_000544_080 Hb_000544_080 Hb_000118_090--Hb_000544_080 Hb_007982_040 Hb_007982_040 Hb_009692_040--Hb_007982_040 Hb_032631_030 Hb_032631_030 Hb_009692_040--Hb_032631_030 Hb_004242_170 Hb_004242_170 Hb_009692_040--Hb_004242_170 Hb_001053_020 Hb_001053_020 Hb_009692_040--Hb_001053_020 Hb_005977_060 Hb_005977_060 Hb_009692_040--Hb_005977_060 Hb_000441_050 Hb_000441_050 Hb_009692_040--Hb_000441_050 Hb_150651_020 Hb_150651_020 Hb_001597_020--Hb_150651_020 Hb_004705_070 Hb_004705_070 Hb_001597_020--Hb_004705_070 Hb_001001_120 Hb_001001_120 Hb_001597_020--Hb_001001_120 Hb_001597_020--Hb_009692_040 Hb_164926_010 Hb_164926_010 Hb_001597_020--Hb_164926_010 Hb_001365_030 Hb_001365_030 Hb_001597_020--Hb_001365_030 Hb_001729_030 Hb_001729_030 Hb_003768_020--Hb_001729_030 Hb_003581_230 Hb_003581_230 Hb_003768_020--Hb_003581_230 Hb_004220_010 Hb_004220_010 Hb_003768_020--Hb_004220_010 Hb_000622_050 Hb_000622_050 Hb_003768_020--Hb_000622_050 Hb_000012_330 Hb_000012_330 Hb_003768_020--Hb_000012_330 Hb_000976_400 Hb_000976_400 Hb_003768_020--Hb_000976_400 Hb_000933_170 Hb_000933_170 Hb_000340_200--Hb_000933_170 Hb_012395_120 Hb_012395_120 Hb_000340_200--Hb_012395_120 Hb_024758_030 Hb_024758_030 Hb_000340_200--Hb_024758_030 Hb_001357_050 Hb_001357_050 Hb_000340_200--Hb_001357_050 Hb_000003_200 Hb_000003_200 Hb_000340_200--Hb_000003_200 Hb_000417_400 Hb_000417_400 Hb_000340_200--Hb_000417_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125343 0 0.337768 0.247482 0.0977682 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0764943 0 0 0.0732814 0.597604

CAGE analysis