Hb_001863_530

Information

Type -
Description -
Location Contig1863: 425230-426022
Sequence    

Annotation

kegg
ID rcu:RCOM_1035140
description hypothetical protein
nr
ID XP_002513915.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJJ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1035140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001863_530 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008484_080 0.092538371 - - PREDICTED: crocetin glucosyltransferase, chloroplastic-like [Jatropha curcas]
3 Hb_023313_050 0.0972635649 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein rcd1-like [Jatropha curcas]
4 Hb_001170_020 0.0977527016 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002434_040 0.0979037872 - - hypothetical protein CICLE_v10022672mg [Citrus clementina]
6 Hb_000053_010 0.0985676556 - - hypothetical protein PRUPE_ppa017696mg [Prunus persica]
7 Hb_000977_250 0.0992779965 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_003050_380 0.0997761719 - - hypothetical protein POPTR_0007s03380g [Populus trichocarpa]
9 Hb_000985_150 0.1026732985 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
10 Hb_005888_020 0.1027355534 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
11 Hb_000297_190 0.1036432329 - - cell wall invertase [Manihot esculenta]
12 Hb_099182_010 0.1052402018 - - PREDICTED: uncharacterized protein LOC101214783 [Cucumis sativus]
13 Hb_014361_160 0.1073852656 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
14 Hb_171810_030 0.1081756661 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
15 Hb_002304_030 0.1083576906 - - hypothetical protein JCGZ_21517 [Jatropha curcas]
16 Hb_003605_170 0.1085394351 - - hypothetical protein POPTR_0013s12020g [Populus trichocarpa]
17 Hb_005754_050 0.1089797187 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
18 Hb_040323_010 0.1111901101 - - -
19 Hb_000210_020 0.1112686899 transcription factor TF Family: OFP Ovate family protein 13, putative [Theobroma cacao]
20 Hb_010288_070 0.1118849737 transcription factor TF Family: MYB MYB-like DNA-binding domain protein [Theobroma cacao]

Gene co-expression network

sample Hb_001863_530 Hb_001863_530 Hb_008484_080 Hb_008484_080 Hb_001863_530--Hb_008484_080 Hb_023313_050 Hb_023313_050 Hb_001863_530--Hb_023313_050 Hb_001170_020 Hb_001170_020 Hb_001863_530--Hb_001170_020 Hb_002434_040 Hb_002434_040 Hb_001863_530--Hb_002434_040 Hb_000053_010 Hb_000053_010 Hb_001863_530--Hb_000053_010 Hb_000977_250 Hb_000977_250 Hb_001863_530--Hb_000977_250 Hb_099182_010 Hb_099182_010 Hb_008484_080--Hb_099182_010 Hb_008484_080--Hb_023313_050 Hb_000191_090 Hb_000191_090 Hb_008484_080--Hb_000191_090 Hb_040323_010 Hb_040323_010 Hb_008484_080--Hb_040323_010 Hb_008484_080--Hb_002434_040 Hb_008484_080--Hb_000977_250 Hb_023313_050--Hb_002434_040 Hb_023313_050--Hb_000053_010 Hb_023313_050--Hb_000977_250 Hb_171810_030 Hb_171810_030 Hb_023313_050--Hb_171810_030 Hb_014361_160 Hb_014361_160 Hb_023313_050--Hb_014361_160 Hb_023313_050--Hb_099182_010 Hb_005888_020 Hb_005888_020 Hb_001170_020--Hb_005888_020 Hb_003050_380 Hb_003050_380 Hb_001170_020--Hb_003050_380 Hb_000297_190 Hb_000297_190 Hb_001170_020--Hb_000297_190 Hb_002304_030 Hb_002304_030 Hb_001170_020--Hb_002304_030 Hb_010288_070 Hb_010288_070 Hb_001170_020--Hb_010288_070 Hb_001170_020--Hb_000977_250 Hb_002434_040--Hb_000053_010 Hb_002434_040--Hb_000977_250 Hb_002434_040--Hb_014361_160 Hb_002434_040--Hb_171810_030 Hb_002434_040--Hb_040323_010 Hb_000053_010--Hb_014361_160 Hb_000053_010--Hb_000977_250 Hb_000053_010--Hb_171810_030 Hb_011433_010 Hb_011433_010 Hb_000053_010--Hb_011433_010 Hb_003605_170 Hb_003605_170 Hb_000977_250--Hb_003605_170 Hb_000977_250--Hb_014361_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.93061 0.36818 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0810662 0 0 0 2.14233

CAGE analysis