Hb_041813_020

Information

Type -
Description -
Location Contig41813: 9001-9775
Sequence    

Annotation

kegg
ID atr:AmtrCp028
description atpE; ATP synthase epsilon chain
nr
ID CAD23900.1
description ATP synthase epsilon subunit [Grubbia rosmarinifolia]
swissprot
ID A0A341
description ATP synthase epsilon chain, chloroplastic OS=Coffea arabica GN=atpE PE=3 SV=1
trembl
ID Q8M9P2
description ATP synthase epsilon chain, chloroplastic (Fragment) OS=Grubbia rosmarinifolia GN=atpE PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41356: 7875-8266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_020 0.0 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
2 Hb_001595_060 0.0027611789 - - hypothetical protein L484_001429 [Morus notabilis]
3 Hb_006267_050 0.0032790921 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_011206_030 0.0087288283 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
5 Hb_048953_010 0.0087288283 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
6 Hb_004772_010 0.0148726314 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
7 Hb_002325_080 0.0154376805 - - -
8 Hb_003504_050 0.0231186692 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
9 Hb_024446_010 0.0351545929 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_064445_030 0.0360059443 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
11 Hb_003828_010 0.0362028498 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
12 Hb_177166_010 0.0371110004 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_006094_010 0.0386396024 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_005781_010 0.0394226463 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
15 Hb_000485_060 0.0410982206 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
16 Hb_002478_050 0.0420085981 - - K(+)/H(+) antiporter, putative [Ricinus communis]
17 Hb_001844_010 0.043551782 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_076836_010 0.0439503476 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
19 Hb_008879_010 0.1155770877 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_003607_100 0.1682775222 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_041813_020 Hb_041813_020 Hb_001595_060 Hb_001595_060 Hb_041813_020--Hb_001595_060 Hb_006267_050 Hb_006267_050 Hb_041813_020--Hb_006267_050 Hb_011206_030 Hb_011206_030 Hb_041813_020--Hb_011206_030 Hb_048953_010 Hb_048953_010 Hb_041813_020--Hb_048953_010 Hb_004772_010 Hb_004772_010 Hb_041813_020--Hb_004772_010 Hb_002325_080 Hb_002325_080 Hb_041813_020--Hb_002325_080 Hb_001595_060--Hb_006267_050 Hb_001595_060--Hb_011206_030 Hb_001595_060--Hb_048953_010 Hb_001595_060--Hb_004772_010 Hb_001595_060--Hb_002325_080 Hb_006267_050--Hb_011206_030 Hb_006267_050--Hb_048953_010 Hb_006267_050--Hb_004772_010 Hb_006267_050--Hb_002325_080 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_004772_010 Hb_003504_050 Hb_003504_050 Hb_011206_030--Hb_003504_050 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_004772_010 Hb_011206_030--Hb_003504_050 Hb_004772_010--Hb_048953_010 Hb_004772_010--Hb_003504_050 Hb_002325_080--Hb_011206_030 Hb_002325_080--Hb_048953_010 Hb_002325_080--Hb_004772_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.212512 0 0 0 0.290027

CAGE analysis