Hb_048953_010

Information

Type -
Description -
Location Contig48953: 31-486
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012453398.1
description PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011206_030 0.0 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
2 Hb_048953_010 0.0 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
3 Hb_006267_050 0.0054497932 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_001595_060 0.005967702 - - hypothetical protein L484_001429 [Morus notabilis]
5 Hb_004772_010 0.0061440965 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
6 Hb_041813_020 0.0087288283 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
7 Hb_003504_050 0.014390914 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
8 Hb_002325_080 0.024165329 - - -
9 Hb_024446_010 0.0264287817 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_064445_030 0.0272803073 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
11 Hb_003828_010 0.0274772538 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
12 Hb_177166_010 0.0283855968 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_006094_010 0.0299145353 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_005781_010 0.0306977577 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
15 Hb_000485_060 0.032373728 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
16 Hb_002478_050 0.0332843287 - - K(+)/H(+) antiporter, putative [Ricinus communis]
17 Hb_001844_010 0.0348279038 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
18 Hb_076836_010 0.0352265731 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
19 Hb_008879_010 0.1242620183 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_003607_100 0.1596448532 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_011206_030 Hb_011206_030 Hb_048953_010 Hb_048953_010 Hb_011206_030--Hb_048953_010 Hb_006267_050 Hb_006267_050 Hb_011206_030--Hb_006267_050 Hb_001595_060 Hb_001595_060 Hb_011206_030--Hb_001595_060 Hb_004772_010 Hb_004772_010 Hb_011206_030--Hb_004772_010 Hb_041813_020 Hb_041813_020 Hb_011206_030--Hb_041813_020 Hb_003504_050 Hb_003504_050 Hb_011206_030--Hb_003504_050 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_006267_050 Hb_011206_030--Hb_001595_060 Hb_011206_030--Hb_004772_010 Hb_011206_030--Hb_041813_020 Hb_011206_030--Hb_003504_050 Hb_006267_050--Hb_001595_060 Hb_006267_050--Hb_041813_020 Hb_006267_050--Hb_048953_010 Hb_006267_050--Hb_004772_010 Hb_002325_080 Hb_002325_080 Hb_006267_050--Hb_002325_080 Hb_001595_060--Hb_041813_020 Hb_001595_060--Hb_048953_010 Hb_001595_060--Hb_004772_010 Hb_001595_060--Hb_002325_080 Hb_004772_010--Hb_048953_010 Hb_004772_010--Hb_003504_050 Hb_004772_010--Hb_041813_020 Hb_041813_020--Hb_048953_010 Hb_041813_020--Hb_002325_080 Hb_024446_010 Hb_024446_010 Hb_003504_050--Hb_024446_010 Hb_064445_030 Hb_064445_030 Hb_003504_050--Hb_064445_030 Hb_003828_010 Hb_003828_010 Hb_003504_050--Hb_003828_010 Hb_177166_010 Hb_177166_010 Hb_003504_050--Hb_177166_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.166364 0 0 0 0.236709

CAGE analysis