Hb_180455_010

Information

Type -
Description -
Location Contig180455: 1-942
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012458064.1
description PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061GQV6
description Gag protease polyprotein OS=Theobroma cacao GN=TCM_039262 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)
-
cDNA
(Sanger)
(ID:Location)
-

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180455_010 0.0 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
2 Hb_024446_010 0.2537970498 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_064445_030 0.2538063222 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_003828_010 0.2538088471 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
5 Hb_177166_010 0.2538223418 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_006094_010 0.2538519195 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_005781_010 0.253870406 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
8 Hb_000485_060 0.2539175523 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
9 Hb_002478_050 0.2539475034 - - K(+)/H(+) antiporter, putative [Ricinus communis]
10 Hb_003504_050 0.2539516601 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
11 Hb_001844_010 0.2540052438 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_076836_010 0.2540215809 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
13 Hb_004772_010 0.2543649036 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
14 Hb_011206_030 0.2548343513 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
15 Hb_048953_010 0.2548343513 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
16 Hb_006267_050 0.2553654895 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_001595_060 0.2554215515 - - hypothetical protein L484_001429 [Morus notabilis]
18 Hb_041813_020 0.255736737 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
19 Hb_002325_080 0.2579997638 - - -
20 Hb_003607_100 0.2858887571 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_180455_010 Hb_180455_010 Hb_024446_010 Hb_024446_010 Hb_180455_010--Hb_024446_010 Hb_064445_030 Hb_064445_030 Hb_180455_010--Hb_064445_030 Hb_003828_010 Hb_003828_010 Hb_180455_010--Hb_003828_010 Hb_177166_010 Hb_177166_010 Hb_180455_010--Hb_177166_010 Hb_006094_010 Hb_006094_010 Hb_180455_010--Hb_006094_010 Hb_005781_010 Hb_005781_010 Hb_180455_010--Hb_005781_010 Hb_024446_010--Hb_064445_030 Hb_024446_010--Hb_003828_010 Hb_024446_010--Hb_177166_010 Hb_024446_010--Hb_006094_010 Hb_024446_010--Hb_005781_010 Hb_000485_060 Hb_000485_060 Hb_024446_010--Hb_000485_060 Hb_064445_030--Hb_003828_010 Hb_064445_030--Hb_177166_010 Hb_064445_030--Hb_006094_010 Hb_064445_030--Hb_005781_010 Hb_064445_030--Hb_000485_060 Hb_003828_010--Hb_177166_010 Hb_003828_010--Hb_006094_010 Hb_003828_010--Hb_005781_010 Hb_003828_010--Hb_000485_060 Hb_177166_010--Hb_006094_010 Hb_177166_010--Hb_005781_010 Hb_177166_010--Hb_000485_060 Hb_006094_010--Hb_005781_010 Hb_006094_010--Hb_000485_060 Hb_002478_050 Hb_002478_050 Hb_006094_010--Hb_002478_050 Hb_005781_010--Hb_000485_060 Hb_005781_010--Hb_002478_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0209866 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0576395 0 0 0 0.0920023

CAGE analysis