Hb_008879_010

Information

Type -
Description -
Location Contig8879: 30623-33233
Sequence    

Annotation

kegg
ID rcu:RCOM_0449350
description Beta-ureidopropionase, putative (EC:3.5.1.6)
nr
ID XP_002532764.1
description Beta-ureidopropionase, putative [Ricinus communis]
swissprot
ID Q8H183
description Beta-ureidopropionase OS=Arabidopsis thaliana GN=PYD3 PE=1 SV=1
trembl
ID B9T3E5
description Beta-ureidopropionase, putative OS=Ricinus communis GN=RCOM_0449350 PE=4 SV=1
Gene Ontology
ID GO:0016810
description beta-ureidopropionase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008879_010 0.0 - - Beta-ureidopropionase, putative [Ricinus communis]
2 Hb_002325_080 0.1002017181 - - -
3 Hb_041813_020 0.1155770877 - - ATP synthase epsilon subunit [Grubbia rosmarinifolia]
4 Hb_001595_060 0.118325061 - - hypothetical protein L484_001429 [Morus notabilis]
5 Hb_006267_050 0.1188404273 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
6 Hb_011206_030 0.1242620183 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_048953_010 0.1242620183 - - PREDICTED: uncharacterized protein LOC105775428 [Gossypium raimondii]
8 Hb_004772_010 0.1303711347 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
9 Hb_003504_050 0.1385656563 - - hypothetical protein JCGZ_23540 [Jatropha curcas]
10 Hb_024446_010 0.1505160746 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_064445_030 0.1513609101 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
12 Hb_003828_010 0.1515562998 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
13 Hb_177166_010 0.1524574161 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_006094_010 0.1539740178 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
15 Hb_005781_010 0.1547508365 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
16 Hb_000485_060 0.1564129125 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
17 Hb_002478_050 0.1573158545 - - K(+)/H(+) antiporter, putative [Ricinus communis]
18 Hb_001844_010 0.1588462705 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_076836_010 0.159241505 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
20 Hb_121338_010 0.2324130927 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]

Gene co-expression network

sample Hb_008879_010 Hb_008879_010 Hb_002325_080 Hb_002325_080 Hb_008879_010--Hb_002325_080 Hb_041813_020 Hb_041813_020 Hb_008879_010--Hb_041813_020 Hb_001595_060 Hb_001595_060 Hb_008879_010--Hb_001595_060 Hb_006267_050 Hb_006267_050 Hb_008879_010--Hb_006267_050 Hb_011206_030 Hb_011206_030 Hb_008879_010--Hb_011206_030 Hb_048953_010 Hb_048953_010 Hb_008879_010--Hb_048953_010 Hb_002325_080--Hb_041813_020 Hb_002325_080--Hb_001595_060 Hb_002325_080--Hb_006267_050 Hb_002325_080--Hb_011206_030 Hb_002325_080--Hb_048953_010 Hb_004772_010 Hb_004772_010 Hb_002325_080--Hb_004772_010 Hb_041813_020--Hb_001595_060 Hb_041813_020--Hb_006267_050 Hb_041813_020--Hb_011206_030 Hb_041813_020--Hb_048953_010 Hb_041813_020--Hb_004772_010 Hb_001595_060--Hb_006267_050 Hb_001595_060--Hb_011206_030 Hb_001595_060--Hb_048953_010 Hb_001595_060--Hb_004772_010 Hb_006267_050--Hb_011206_030 Hb_006267_050--Hb_048953_010 Hb_006267_050--Hb_004772_010 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_004772_010 Hb_003504_050 Hb_003504_050 Hb_011206_030--Hb_003504_050 Hb_011206_030--Hb_048953_010 Hb_011206_030--Hb_004772_010 Hb_011206_030--Hb_003504_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133643 0 0 0 0.10555

CAGE analysis