Hb_000757_090

Information

Type -
Description -
Location Contig757: 99731-99943
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_007020053.1
description SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FK54
description SPla/RYanodine receptor domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_036425 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000757_090 0.0 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
2 Hb_156924_020 0.0401987361 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
3 Hb_094852_010 0.1188676453 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_001344_030 0.1219191442 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_186054_010 0.1709955046 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_178654_020 0.1749086834 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
7 Hb_012938_010 0.2292780714 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_071130_040 0.2431394424 - - conserved hypothetical protein [Ricinus communis]
9 Hb_065858_010 0.2464886849 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_104721_010 0.2489409559 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
11 Hb_001519_020 0.2505719387 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
12 Hb_158235_010 0.2543205245 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
13 Hb_003020_290 0.2557698768 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
14 Hb_124621_010 0.266878011 - - hypothetical protein L484_019698 [Morus notabilis]
15 Hb_000387_090 0.2903702194 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
16 Hb_005654_010 0.2938104906 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_002811_340 0.3031625229 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
18 Hb_000375_180 0.3099274322 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
19 Hb_033152_040 0.3105028184 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
20 Hb_007157_010 0.3283026916 - - -

Gene co-expression network

sample Hb_000757_090 Hb_000757_090 Hb_156924_020 Hb_156924_020 Hb_000757_090--Hb_156924_020 Hb_094852_010 Hb_094852_010 Hb_000757_090--Hb_094852_010 Hb_001344_030 Hb_001344_030 Hb_000757_090--Hb_001344_030 Hb_186054_010 Hb_186054_010 Hb_000757_090--Hb_186054_010 Hb_178654_020 Hb_178654_020 Hb_000757_090--Hb_178654_020 Hb_012938_010 Hb_012938_010 Hb_000757_090--Hb_012938_010 Hb_156924_020--Hb_094852_010 Hb_156924_020--Hb_178654_020 Hb_156924_020--Hb_001344_030 Hb_156924_020--Hb_186054_010 Hb_065858_010 Hb_065858_010 Hb_156924_020--Hb_065858_010 Hb_094852_010--Hb_178654_020 Hb_094852_010--Hb_065858_010 Hb_124621_010 Hb_124621_010 Hb_094852_010--Hb_124621_010 Hb_094852_010--Hb_001344_030 Hb_001344_030--Hb_186054_010 Hb_158235_010 Hb_158235_010 Hb_001344_030--Hb_158235_010 Hb_104721_010 Hb_104721_010 Hb_001344_030--Hb_104721_010 Hb_186054_010--Hb_104721_010 Hb_186054_010--Hb_158235_010 Hb_186054_010--Hb_094852_010 Hb_178654_020--Hb_065858_010 Hb_178654_020--Hb_124621_010 Hb_178654_020--Hb_012938_010 Hb_005654_010 Hb_005654_010 Hb_012938_010--Hb_005654_010 Hb_071130_040 Hb_071130_040 Hb_012938_010--Hb_071130_040 Hb_000375_180 Hb_000375_180 Hb_012938_010--Hb_000375_180 Hb_002811_340 Hb_002811_340 Hb_012938_010--Hb_002811_340 Hb_000016_120 Hb_000016_120 Hb_012938_010--Hb_000016_120 Hb_012938_010--Hb_156924_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11407 0.895634 0 0 2.11482

CAGE analysis