Hb_003001_100

Information

Type -
Description -
Location Contig3001: 98837-106441
Sequence    

Annotation

kegg
ID pmum:103334281
description uncharacterized LOC103334281
nr
ID XP_008235446.1
description PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
swissprot
ID Q8LPT3
description Membrane protein of ER body-like protein OS=Arabidopsis thaliana GN=MEBL PE=2 SV=1
trembl
ID B9T3C2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1750150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31670: 98887-100032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_100 0.0 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
2 Hb_000173_100 0.2260385709 - - -
3 Hb_004958_030 0.2550652284 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
4 Hb_000067_020 0.2619832663 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
5 Hb_102438_010 0.2703239722 - - -
6 Hb_159085_010 0.2812563221 - - -
7 Hb_000008_260 0.2868696754 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000258_100 0.28850265 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009467_030 0.2969765733 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
10 Hb_000720_160 0.3027995156 - - PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
11 Hb_037964_010 0.3030059928 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
12 Hb_001787_040 0.3040067769 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_039548_010 0.3070808333 - - hypothetical protein RCOM_1685970 [Ricinus communis]
14 Hb_007904_270 0.3105838099 - - -
15 Hb_001936_140 0.3112836833 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
16 Hb_007741_040 0.3116959954 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
17 Hb_002835_220 0.3119485379 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
18 Hb_017436_010 0.3137580925 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_002245_040 0.3186898149 - - thioredoxin h [Hevea brasiliensis]
20 Hb_002260_020 0.3206475556 - - -

Gene co-expression network

sample Hb_003001_100 Hb_003001_100 Hb_000173_100 Hb_000173_100 Hb_003001_100--Hb_000173_100 Hb_004958_030 Hb_004958_030 Hb_003001_100--Hb_004958_030 Hb_000067_020 Hb_000067_020 Hb_003001_100--Hb_000067_020 Hb_102438_010 Hb_102438_010 Hb_003001_100--Hb_102438_010 Hb_159085_010 Hb_159085_010 Hb_003001_100--Hb_159085_010 Hb_000008_260 Hb_000008_260 Hb_003001_100--Hb_000008_260 Hb_004374_060 Hb_004374_060 Hb_000173_100--Hb_004374_060 Hb_019219_020 Hb_019219_020 Hb_000173_100--Hb_019219_020 Hb_004128_210 Hb_004128_210 Hb_000173_100--Hb_004128_210 Hb_000720_160 Hb_000720_160 Hb_000173_100--Hb_000720_160 Hb_002685_180 Hb_002685_180 Hb_000173_100--Hb_002685_180 Hb_017436_010 Hb_017436_010 Hb_004958_030--Hb_017436_010 Hb_039548_010 Hb_039548_010 Hb_004958_030--Hb_039548_010 Hb_004958_030--Hb_159085_010 Hb_002835_220 Hb_002835_220 Hb_004958_030--Hb_002835_220 Hb_188382_010 Hb_188382_010 Hb_004958_030--Hb_188382_010 Hb_039305_010 Hb_039305_010 Hb_000067_020--Hb_039305_010 Hb_000270_150 Hb_000270_150 Hb_000067_020--Hb_000270_150 Hb_000736_010 Hb_000736_010 Hb_000067_020--Hb_000736_010 Hb_000979_050 Hb_000979_050 Hb_000067_020--Hb_000979_050 Hb_003773_030 Hb_003773_030 Hb_000067_020--Hb_003773_030 Hb_008092_140 Hb_008092_140 Hb_000067_020--Hb_008092_140 Hb_102438_010--Hb_000008_260 Hb_009467_030 Hb_009467_030 Hb_102438_010--Hb_009467_030 Hb_004917_050 Hb_004917_050 Hb_102438_010--Hb_004917_050 Hb_007904_270 Hb_007904_270 Hb_102438_010--Hb_007904_270 Hb_001787_040 Hb_001787_040 Hb_102438_010--Hb_001787_040 Hb_102438_010--Hb_159085_010 Hb_159085_010--Hb_039305_010 Hb_159085_010--Hb_000736_010 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_159085_010--Hb_000067_020 Hb_000008_260--Hb_009467_030 Hb_000008_260--Hb_004917_050 Hb_000008_260--Hb_007904_270 Hb_000008_260--Hb_000979_050 Hb_000008_260--Hb_159085_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0248272 0 0.322033 0.327258 2.11666 0.413951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.04695 2.47798 0.187431 0.0236841 0.292362

CAGE analysis