Hb_004917_050

Information

Type -
Description -
Location Contig4917: 49237-57022
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004917_050 0.0 - - -
2 Hb_009467_030 0.124378962 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
3 Hb_000008_260 0.1322857471 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000979_050 0.1532054085 - - -
5 Hb_102438_010 0.1745488154 - - -
6 Hb_001386_080 0.2116338774 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
7 Hb_008092_140 0.2120516705 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
8 Hb_001534_020 0.2132744794 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007904_270 0.2272458332 - - -
10 Hb_000270_820 0.2312237262 - - -
11 Hb_000510_380 0.233744047 - - -
12 Hb_000482_130 0.2337447963 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_012543_020 0.2337454642 - - -
14 Hb_185616_010 0.2337465356 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_061463_010 0.2337522527 - - Cucumisin precursor, putative [Ricinus communis]
16 Hb_002130_010 0.2337542292 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_000098_160 0.2337641281 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003052_160 0.2337641281 - - -
19 Hb_000413_310 0.2337660824 - - -
20 Hb_007393_010 0.2337811807 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]

Gene co-expression network

sample Hb_004917_050 Hb_004917_050 Hb_009467_030 Hb_009467_030 Hb_004917_050--Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_004917_050--Hb_000008_260 Hb_000979_050 Hb_000979_050 Hb_004917_050--Hb_000979_050 Hb_102438_010 Hb_102438_010 Hb_004917_050--Hb_102438_010 Hb_001386_080 Hb_001386_080 Hb_004917_050--Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_004917_050--Hb_008092_140 Hb_009467_030--Hb_000008_260 Hb_009467_030--Hb_102438_010 Hb_007904_270 Hb_007904_270 Hb_009467_030--Hb_007904_270 Hb_009467_030--Hb_001386_080 Hb_009467_030--Hb_000979_050 Hb_000008_260--Hb_102438_010 Hb_000008_260--Hb_007904_270 Hb_000008_260--Hb_000979_050 Hb_159085_010 Hb_159085_010 Hb_000008_260--Hb_159085_010 Hb_000979_050--Hb_008092_140 Hb_039305_010 Hb_039305_010 Hb_000979_050--Hb_039305_010 Hb_000067_020 Hb_000067_020 Hb_000979_050--Hb_000067_020 Hb_000979_050--Hb_001386_080 Hb_102438_010--Hb_007904_270 Hb_001787_040 Hb_001787_040 Hb_102438_010--Hb_001787_040 Hb_102438_010--Hb_159085_010 Hb_001386_080--Hb_008092_140 Hb_002094_040 Hb_002094_040 Hb_001386_080--Hb_002094_040 Hb_002997_130 Hb_002997_130 Hb_001386_080--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_001386_080--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_001386_080--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_001386_080--Hb_004899_270 Hb_008092_140--Hb_002997_130 Hb_008092_140--Hb_028462_010 Hb_008092_140--Hb_123098_010 Hb_008092_140--Hb_004899_270 Hb_000111_160 Hb_000111_160 Hb_008092_140--Hb_000111_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0378447 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.277135 0.18165 0 0.0145848 0

CAGE analysis