Hb_009467_030

Information

Type transcription factor
Description TF Family: SET
Location Contig9467: 23621-30589
Sequence    

Annotation

kegg
ID rcu:RCOM_1579260
description trithorax, putative (EC:2.1.1.43)
nr
ID XP_012090074.1
description PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
swissprot
ID Q8GZ42
description Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1
trembl
ID A0A067JE56
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_25977 PE=4 SV=1
Gene Ontology
ID GO:0008168
description histone-lysine n-methyltransferase atx5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009467_030 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
2 Hb_000008_260 0.0238393171 - - conserved hypothetical protein [Ricinus communis]
3 Hb_102438_010 0.1022514247 - - -
4 Hb_004917_050 0.124378962 - - -
5 Hb_007904_270 0.1897587174 - - -
6 Hb_001386_080 0.1988541794 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
7 Hb_000979_050 0.1993266538 - - -
8 Hb_008092_140 0.2012644644 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
9 Hb_159085_010 0.2211090158 - - -
10 Hb_000270_820 0.2245561121 - - -
11 Hb_005834_030 0.2274101816 - - -
12 Hb_039305_010 0.2278656078 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
13 Hb_003675_010 0.2284820573 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
14 Hb_000510_380 0.228980327 - - -
15 Hb_000482_130 0.2289812651 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_012543_020 0.2289821012 - - -
17 Hb_185616_010 0.2289834425 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_061463_010 0.2289905989 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_002130_010 0.2289930727 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_000098_160 0.2290054598 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009467_030 Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_009467_030--Hb_000008_260 Hb_102438_010 Hb_102438_010 Hb_009467_030--Hb_102438_010 Hb_004917_050 Hb_004917_050 Hb_009467_030--Hb_004917_050 Hb_007904_270 Hb_007904_270 Hb_009467_030--Hb_007904_270 Hb_001386_080 Hb_001386_080 Hb_009467_030--Hb_001386_080 Hb_000979_050 Hb_000979_050 Hb_009467_030--Hb_000979_050 Hb_000008_260--Hb_102438_010 Hb_000008_260--Hb_004917_050 Hb_000008_260--Hb_007904_270 Hb_000008_260--Hb_000979_050 Hb_159085_010 Hb_159085_010 Hb_000008_260--Hb_159085_010 Hb_102438_010--Hb_004917_050 Hb_102438_010--Hb_007904_270 Hb_001787_040 Hb_001787_040 Hb_102438_010--Hb_001787_040 Hb_102438_010--Hb_159085_010 Hb_004917_050--Hb_000979_050 Hb_004917_050--Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_004917_050--Hb_008092_140 Hb_007904_270--Hb_159085_010 Hb_007904_270--Hb_004917_050 Hb_000736_010 Hb_000736_010 Hb_007904_270--Hb_000736_010 Hb_001386_080--Hb_008092_140 Hb_002094_040 Hb_002094_040 Hb_001386_080--Hb_002094_040 Hb_002997_130 Hb_002997_130 Hb_001386_080--Hb_002997_130 Hb_028462_010 Hb_028462_010 Hb_001386_080--Hb_028462_010 Hb_123098_010 Hb_123098_010 Hb_001386_080--Hb_123098_010 Hb_004899_270 Hb_004899_270 Hb_001386_080--Hb_004899_270 Hb_000979_050--Hb_008092_140 Hb_039305_010 Hb_039305_010 Hb_000979_050--Hb_039305_010 Hb_000067_020 Hb_000067_020 Hb_000979_050--Hb_000067_020 Hb_000979_050--Hb_001386_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0390951 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22285 0.14023 0 0 0

CAGE analysis