Hb_001787_040

Information

Type -
Description -
Location Contig1787: 58289-60974
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001787_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000008_260 0.2207665301 - - conserved hypothetical protein [Ricinus communis]
3 Hb_102438_010 0.2209548894 - - -
4 Hb_009467_030 0.2376053921 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
5 Hb_037964_010 0.2573217049 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
6 Hb_000987_090 0.2817847855 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
7 Hb_159085_010 0.2853859763 - - -
8 Hb_004917_050 0.2897474938 - - -
9 Hb_007904_270 0.2911411038 - - -
10 Hb_003001_100 0.3040067769 - - PREDICTED: uncharacterized protein LOC103334281 [Prunus mume]
11 Hb_007713_010 0.3044107259 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
12 Hb_000173_100 0.3208269402 - - -
13 Hb_000979_050 0.3298354679 - - -
14 Hb_039305_010 0.3428190911 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
15 Hb_039548_010 0.3442855658 - - hypothetical protein RCOM_1685970 [Ricinus communis]
16 Hb_006452_150 0.344286491 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
17 Hb_003773_030 0.3444068545 - - -
18 Hb_002498_090 0.3485996676 - - -
19 Hb_004129_030 0.3488266259 - - PREDICTED: cytochrome b561 domain-containing protein At2g30890-like isoform X2 [Populus euphratica]
20 Hb_004958_030 0.3505243168 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001787_040 Hb_001787_040 Hb_000008_260 Hb_000008_260 Hb_001787_040--Hb_000008_260 Hb_102438_010 Hb_102438_010 Hb_001787_040--Hb_102438_010 Hb_009467_030 Hb_009467_030 Hb_001787_040--Hb_009467_030 Hb_037964_010 Hb_037964_010 Hb_001787_040--Hb_037964_010 Hb_000987_090 Hb_000987_090 Hb_001787_040--Hb_000987_090 Hb_159085_010 Hb_159085_010 Hb_001787_040--Hb_159085_010 Hb_000008_260--Hb_009467_030 Hb_000008_260--Hb_102438_010 Hb_004917_050 Hb_004917_050 Hb_000008_260--Hb_004917_050 Hb_007904_270 Hb_007904_270 Hb_000008_260--Hb_007904_270 Hb_000979_050 Hb_000979_050 Hb_000008_260--Hb_000979_050 Hb_000008_260--Hb_159085_010 Hb_102438_010--Hb_009467_030 Hb_102438_010--Hb_004917_050 Hb_102438_010--Hb_007904_270 Hb_102438_010--Hb_159085_010 Hb_009467_030--Hb_004917_050 Hb_009467_030--Hb_007904_270 Hb_001386_080 Hb_001386_080 Hb_009467_030--Hb_001386_080 Hb_009467_030--Hb_000979_050 Hb_037964_010--Hb_000008_260 Hb_037964_010--Hb_009467_030 Hb_005736_040 Hb_005736_040 Hb_037964_010--Hb_005736_040 Hb_006452_150 Hb_006452_150 Hb_037964_010--Hb_006452_150 Hb_000200_320 Hb_000200_320 Hb_037964_010--Hb_000200_320 Hb_000987_090--Hb_007904_270 Hb_000275_040 Hb_000275_040 Hb_000987_090--Hb_000275_040 Hb_000749_080 Hb_000749_080 Hb_000987_090--Hb_000749_080 Hb_000803_040 Hb_000803_040 Hb_000987_090--Hb_000803_040 Hb_032202_030 Hb_032202_030 Hb_000987_090--Hb_032202_030 Hb_039305_010 Hb_039305_010 Hb_159085_010--Hb_039305_010 Hb_000736_010 Hb_000736_010 Hb_159085_010--Hb_000736_010 Hb_003773_030 Hb_003773_030 Hb_159085_010--Hb_003773_030 Hb_001141_400 Hb_001141_400 Hb_159085_010--Hb_001141_400 Hb_000373_300 Hb_000373_300 Hb_159085_010--Hb_000373_300 Hb_000067_020 Hb_000067_020 Hb_159085_010--Hb_000067_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0175106 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212484 0.0167192 0 0 0

CAGE analysis