Hb_000749_080

Information

Type -
Description -
Location Contig749: 69000-69913
Sequence    

Annotation

kegg
ID rcu:RCOM_1010380
description Alpha-expansin 12 precursor, putative
nr
ID XP_002527600.1
description Alpha-expansin 12 precursor, putative [Ricinus communis]
swissprot
ID Q9LDJ3
description Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1
trembl
ID B9SNN6
description Alpha-expansin 12, putative OS=Ricinus communis GN=RCOM_1010380 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56783: 68976-69636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_080 0.0 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
2 Hb_000803_040 0.1974307213 - - -
3 Hb_037964_010 0.2818010994 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
4 Hb_001186_080 0.2917267182 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
5 Hb_000111_230 0.2984003392 - - -
6 Hb_003322_010 0.3018675717 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_000987_090 0.3037300703 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
8 Hb_128051_010 0.3058223521 - - -
9 Hb_032202_030 0.3136364314 - - -
10 Hb_004931_010 0.3148452916 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
11 Hb_156850_060 0.3183555041 - - PREDICTED: uncharacterized protein LOC105635248 [Jatropha curcas]
12 Hb_000208_030 0.3236209471 - - -
13 Hb_000200_320 0.3236873538 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
14 Hb_012163_030 0.3268749105 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
15 Hb_000445_190 0.328995417 - - -
16 Hb_148891_010 0.3392046558 - - -
17 Hb_003209_050 0.3421741882 - - hypothetical protein JCGZ_15683 [Jatropha curcas]
18 Hb_002526_020 0.3449660597 - - -
19 Hb_069022_010 0.3458819842 - - conserved hypothetical protein [Ricinus communis]
20 Hb_092449_010 0.3496501214 - - -

Gene co-expression network

sample Hb_000749_080 Hb_000749_080 Hb_000803_040 Hb_000803_040 Hb_000749_080--Hb_000803_040 Hb_037964_010 Hb_037964_010 Hb_000749_080--Hb_037964_010 Hb_001186_080 Hb_001186_080 Hb_000749_080--Hb_001186_080 Hb_000111_230 Hb_000111_230 Hb_000749_080--Hb_000111_230 Hb_003322_010 Hb_003322_010 Hb_000749_080--Hb_003322_010 Hb_000987_090 Hb_000987_090 Hb_000749_080--Hb_000987_090 Hb_032202_030 Hb_032202_030 Hb_000803_040--Hb_032202_030 Hb_148891_010 Hb_148891_010 Hb_000803_040--Hb_148891_010 Hb_000529_240 Hb_000529_240 Hb_000803_040--Hb_000529_240 Hb_000803_040--Hb_003322_010 Hb_000445_190 Hb_000445_190 Hb_000803_040--Hb_000445_190 Hb_000008_260 Hb_000008_260 Hb_037964_010--Hb_000008_260 Hb_009467_030 Hb_009467_030 Hb_037964_010--Hb_009467_030 Hb_005736_040 Hb_005736_040 Hb_037964_010--Hb_005736_040 Hb_001787_040 Hb_001787_040 Hb_037964_010--Hb_001787_040 Hb_006452_150 Hb_006452_150 Hb_037964_010--Hb_006452_150 Hb_000200_320 Hb_000200_320 Hb_037964_010--Hb_000200_320 Hb_000792_120 Hb_000792_120 Hb_001186_080--Hb_000792_120 Hb_168711_010 Hb_168711_010 Hb_001186_080--Hb_168711_010 Hb_000032_350 Hb_000032_350 Hb_001186_080--Hb_000032_350 Hb_000300_210 Hb_000300_210 Hb_001186_080--Hb_000300_210 Hb_001101_010 Hb_001101_010 Hb_001186_080--Hb_001101_010 Hb_004931_010 Hb_004931_010 Hb_001186_080--Hb_004931_010 Hb_004241_010 Hb_004241_010 Hb_000111_230--Hb_004241_010 Hb_069022_010 Hb_069022_010 Hb_000111_230--Hb_069022_010 Hb_005714_050 Hb_005714_050 Hb_000111_230--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000111_230--Hb_032974_010 Hb_000414_150 Hb_000414_150 Hb_000111_230--Hb_000414_150 Hb_002157_090 Hb_002157_090 Hb_000111_230--Hb_002157_090 Hb_003322_010--Hb_004931_010 Hb_001221_560 Hb_001221_560 Hb_003322_010--Hb_001221_560 Hb_003020_080 Hb_003020_080 Hb_003322_010--Hb_003020_080 Hb_000098_290 Hb_000098_290 Hb_003322_010--Hb_000098_290 Hb_001377_400 Hb_001377_400 Hb_003322_010--Hb_001377_400 Hb_000987_090--Hb_001787_040 Hb_007904_270 Hb_007904_270 Hb_000987_090--Hb_007904_270 Hb_000275_040 Hb_000275_040 Hb_000987_090--Hb_000275_040 Hb_000987_090--Hb_000803_040 Hb_000987_090--Hb_032202_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0533588 0.0718848 0 0.0638154 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.146384 0.287729 0 0.0233438 0

CAGE analysis