Hb_032202_030

Information

Type -
Description -
Location Contig32202: 27015-28387
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_030 0.0 - - -
2 Hb_000803_040 0.1815820187 - - -
3 Hb_148891_010 0.2780179719 - - -
4 Hb_000445_190 0.2853971761 - - -
5 Hb_000567_040 0.2861764327 - - PREDICTED: uncharacterized protein LOC105649657 [Jatropha curcas]
6 Hb_002685_180 0.2908219235 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
7 Hb_000529_240 0.2942694724 - - -
8 Hb_001495_060 0.3068418211 - - PREDICTED: probable aldo-keto reductase 1 [Jatropha curcas]
9 Hb_001265_010 0.3104865698 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
10 Hb_116195_010 0.312115202 - - -
11 Hb_000749_080 0.3136364314 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
12 Hb_000987_090 0.3141948426 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
13 Hb_004453_030 0.316267553 - - hypothetical protein POPTR_0006s26790g [Populus trichocarpa]
14 Hb_007904_270 0.3171572476 - - -
15 Hb_000627_100 0.3202025137 - - -
16 Hb_000173_100 0.3234557878 - - -
17 Hb_003209_030 0.330333847 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
18 Hb_000453_210 0.3310942493 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
19 Hb_002175_040 0.3336460003 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
20 Hb_000275_040 0.3357322085 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_032202_030 Hb_032202_030 Hb_000803_040 Hb_000803_040 Hb_032202_030--Hb_000803_040 Hb_148891_010 Hb_148891_010 Hb_032202_030--Hb_148891_010 Hb_000445_190 Hb_000445_190 Hb_032202_030--Hb_000445_190 Hb_000567_040 Hb_000567_040 Hb_032202_030--Hb_000567_040 Hb_002685_180 Hb_002685_180 Hb_032202_030--Hb_002685_180 Hb_000529_240 Hb_000529_240 Hb_032202_030--Hb_000529_240 Hb_000749_080 Hb_000749_080 Hb_000803_040--Hb_000749_080 Hb_000803_040--Hb_148891_010 Hb_000803_040--Hb_000529_240 Hb_003322_010 Hb_003322_010 Hb_000803_040--Hb_003322_010 Hb_000803_040--Hb_000445_190 Hb_148891_010--Hb_000445_190 Hb_004102_030 Hb_004102_030 Hb_148891_010--Hb_004102_030 Hb_001017_080 Hb_001017_080 Hb_148891_010--Hb_001017_080 Hb_004931_010 Hb_004931_010 Hb_148891_010--Hb_004931_010 Hb_001495_060 Hb_001495_060 Hb_148891_010--Hb_001495_060 Hb_069022_010 Hb_069022_010 Hb_000445_190--Hb_069022_010 Hb_000099_230 Hb_000099_230 Hb_000445_190--Hb_000099_230 Hb_000445_190--Hb_001017_080 Hb_005714_050 Hb_005714_050 Hb_000445_190--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_000445_190--Hb_032974_010 Hb_000627_100 Hb_000627_100 Hb_000567_040--Hb_000627_100 Hb_027428_030 Hb_027428_030 Hb_000567_040--Hb_027428_030 Hb_001860_010 Hb_001860_010 Hb_000567_040--Hb_001860_010 Hb_000237_130 Hb_000237_130 Hb_000567_040--Hb_000237_130 Hb_008983_010 Hb_008983_010 Hb_000567_040--Hb_008983_010 Hb_010913_010 Hb_010913_010 Hb_000567_040--Hb_010913_010 Hb_000453_210 Hb_000453_210 Hb_002685_180--Hb_000453_210 Hb_002685_180--Hb_001495_060 Hb_007904_090 Hb_007904_090 Hb_002685_180--Hb_007904_090 Hb_011242_030 Hb_011242_030 Hb_002685_180--Hb_011242_030 Hb_000376_160 Hb_000376_160 Hb_002685_180--Hb_000376_160 Hb_019033_010 Hb_019033_010 Hb_002685_180--Hb_019033_010 Hb_003209_030 Hb_003209_030 Hb_000529_240--Hb_003209_030 Hb_000529_240--Hb_001495_060 Hb_008667_050 Hb_008667_050 Hb_000529_240--Hb_008667_050 Hb_000331_320 Hb_000331_320 Hb_000529_240--Hb_000331_320 Hb_001047_140 Hb_001047_140 Hb_000529_240--Hb_001047_140 Hb_000529_240--Hb_000453_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123122 0.471343 0.217767 0 0.851301 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46885 0.692986 0 0.104401 0

CAGE analysis