Hb_006452_150

Information

Type transcription factor
Description TF Family: M-type
Location Contig6452: 132749-133853
Sequence    

Annotation

kegg
ID cmo:103498847
description MADS-box transcription factor 8-like
nr
ID XP_012085899.1
description PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
swissprot
ID Q42464
description Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1
trembl
ID A0A022R3T8
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014464mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description flowering locus c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_150 0.0 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
2 Hb_001504_320 0.2081296366 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
3 Hb_000300_210 0.2307782017 - - gd2b, putative [Ricinus communis]
4 Hb_002498_090 0.233731585 - - -
5 Hb_000387_060 0.2495419615 - - -
6 Hb_001101_010 0.2547739759 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
7 Hb_001425_110 0.26089553 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
8 Hb_037964_010 0.2643087014 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
9 Hb_003376_210 0.265527877 - - -
10 Hb_032202_250 0.270234124 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
11 Hb_000264_130 0.2714529525 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
12 Hb_001433_100 0.2756565619 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
13 Hb_034482_040 0.2811105821 - - aspartate kinase, partial [Francisella tularensis]
14 Hb_003226_240 0.2853162702 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
15 Hb_001186_080 0.2917822488 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
16 Hb_001386_080 0.2918172086 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
17 Hb_148422_010 0.2923088623 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
18 Hb_001425_070 0.2924216768 - - -
19 Hb_001842_080 0.2924823569 - - -
20 Hb_002918_300 0.2927854808 - - -

Gene co-expression network

sample Hb_006452_150 Hb_006452_150 Hb_001504_320 Hb_001504_320 Hb_006452_150--Hb_001504_320 Hb_000300_210 Hb_000300_210 Hb_006452_150--Hb_000300_210 Hb_002498_090 Hb_002498_090 Hb_006452_150--Hb_002498_090 Hb_000387_060 Hb_000387_060 Hb_006452_150--Hb_000387_060 Hb_001101_010 Hb_001101_010 Hb_006452_150--Hb_001101_010 Hb_001425_110 Hb_001425_110 Hb_006452_150--Hb_001425_110 Hb_001504_320--Hb_001425_110 Hb_001842_120 Hb_001842_120 Hb_001504_320--Hb_001842_120 Hb_001504_320--Hb_001101_010 Hb_008092_140 Hb_008092_140 Hb_001504_320--Hb_008092_140 Hb_003837_020 Hb_003837_020 Hb_001504_320--Hb_003837_020 Hb_003773_030 Hb_003773_030 Hb_001504_320--Hb_003773_030 Hb_001433_100 Hb_001433_100 Hb_000300_210--Hb_001433_100 Hb_032202_250 Hb_032202_250 Hb_000300_210--Hb_032202_250 Hb_003226_240 Hb_003226_240 Hb_000300_210--Hb_003226_240 Hb_000300_210--Hb_001425_110 Hb_000792_120 Hb_000792_120 Hb_000300_210--Hb_000792_120 Hb_000329_660 Hb_000329_660 Hb_000300_210--Hb_000329_660 Hb_001998_060 Hb_001998_060 Hb_002498_090--Hb_001998_060 Hb_039112_010 Hb_039112_010 Hb_002498_090--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_002498_090--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_002498_090--Hb_002392_050 Hb_029299_010 Hb_029299_010 Hb_002498_090--Hb_029299_010 Hb_115720_010 Hb_115720_010 Hb_002498_090--Hb_115720_010 Hb_003211_050 Hb_003211_050 Hb_000387_060--Hb_003211_050 Hb_032660_020 Hb_032660_020 Hb_000387_060--Hb_032660_020 Hb_000387_060--Hb_000329_660 Hb_000714_010 Hb_000714_010 Hb_000387_060--Hb_000714_010 Hb_000387_060--Hb_001425_110 Hb_000387_060--Hb_000792_120 Hb_002918_300 Hb_002918_300 Hb_001101_010--Hb_002918_300 Hb_000032_350 Hb_000032_350 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001101_010--Hb_001425_110 Hb_001101_010--Hb_032660_020 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_001425_110--Hb_000329_660 Hb_000264_130 Hb_000264_130 Hb_001425_110--Hb_000264_130 Hb_001425_110--Hb_001842_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0742053 0 0.373422 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11356 2.09949 0.274854 0 0

CAGE analysis