Hb_002498_090

Information

Type -
Description -
Location Contig2498: 49357-50139
Sequence    

Annotation

kegg
ID pxb:103948308
description synaptonemal complex protein 1-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005783
description b-cell receptor-associated protein 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25986: 49438-54521
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002498_090 0.0 - - -
2 Hb_001998_060 0.2142191026 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_039112_010 0.2201899915 - - -
4 Hb_000869_110 0.2205818471 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002392_050 0.2206293541 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
6 Hb_029299_010 0.2231884217 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_115720_010 0.2247385201 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
8 Hb_006452_150 0.233731585 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
9 Hb_001504_320 0.2394837142 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
10 Hb_031284_050 0.2417364812 - - -
11 Hb_034587_030 0.2495518013 - - -
12 Hb_018609_040 0.2514802496 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
13 Hb_000270_800 0.2515460605 - - -
14 Hb_075060_030 0.2516029398 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
15 Hb_003837_020 0.2545131975 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
16 Hb_003773_030 0.2546171131 - - -
17 Hb_001386_080 0.2553864198 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
18 Hb_007713_010 0.2585676543 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
19 Hb_002903_010 0.2610963958 - - 60S ribosomal protein L37-3 [Morus notabilis]
20 Hb_000504_010 0.2652971181 - - oleosin 18.2 kDa-like [Jatropha curcas]

Gene co-expression network

sample Hb_002498_090 Hb_002498_090 Hb_001998_060 Hb_001998_060 Hb_002498_090--Hb_001998_060 Hb_039112_010 Hb_039112_010 Hb_002498_090--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_002498_090--Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_002498_090--Hb_002392_050 Hb_029299_010 Hb_029299_010 Hb_002498_090--Hb_029299_010 Hb_115720_010 Hb_115720_010 Hb_002498_090--Hb_115720_010 Hb_001998_060--Hb_039112_010 Hb_001998_060--Hb_000869_110 Hb_001998_060--Hb_002392_050 Hb_001998_060--Hb_115720_010 Hb_031284_050 Hb_031284_050 Hb_001998_060--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_001998_060--Hb_034587_030 Hb_039112_010--Hb_000869_110 Hb_039112_010--Hb_002392_050 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_039112_010--Hb_018609_040 Hb_000869_110--Hb_002392_050 Hb_000869_110--Hb_031284_050 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040 Hb_002392_050--Hb_031284_050 Hb_002392_050--Hb_034587_030 Hb_002392_050--Hb_018609_040 Hb_022500_010 Hb_022500_010 Hb_029299_010--Hb_022500_010 Hb_007713_010 Hb_007713_010 Hb_029299_010--Hb_007713_010 Hb_039305_010 Hb_039305_010 Hb_029299_010--Hb_039305_010 Hb_003773_030 Hb_003773_030 Hb_029299_010--Hb_003773_030 Hb_012324_020 Hb_012324_020 Hb_029299_010--Hb_012324_020 Hb_000504_010 Hb_000504_010 Hb_115720_010--Hb_000504_010 Hb_115720_010--Hb_039112_010 Hb_115720_010--Hb_000869_110 Hb_115720_010--Hb_002392_050 Hb_002903_010 Hb_002903_010 Hb_115720_010--Hb_002903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0444055 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0.345672 0 0 0

CAGE analysis