Hb_022500_010

Information

Type -
Description -
Location Contig22500: 34-605
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022500_010 0.0 - - -
2 Hb_029299_010 0.1632068491 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
3 Hb_007713_010 0.2193621078 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
4 Hb_004116_110 0.2572372408 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
5 Hb_015401_010 0.258224797 - - hypothetical protein VITISV_001548 [Vitis vinifera]
6 Hb_000367_170 0.2585291965 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
7 Hb_188382_010 0.2650141442 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_145890_010 0.265978709 - - unnamed protein product [Vitis vinifera]
9 Hb_015675_060 0.2666009881 - - -
10 Hb_007477_090 0.2667028898 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
11 Hb_151930_020 0.2717890162 - - Wound-induced protein WIN1 precursor, putative [Ricinus communis]
12 Hb_039305_010 0.2735094232 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
13 Hb_004048_010 0.2740058886 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
14 Hb_003773_030 0.2747722412 - - -
15 Hb_006501_030 0.2806379122 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
16 Hb_039548_010 0.2806450119 - - hypothetical protein RCOM_1685970 [Ricinus communis]
17 Hb_001007_050 0.2861462568 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
18 Hb_056768_010 0.2862959182 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
19 Hb_002742_010 0.2864923908 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
20 Hb_029982_010 0.2882881322 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]

Gene co-expression network

sample Hb_022500_010 Hb_022500_010 Hb_029299_010 Hb_029299_010 Hb_022500_010--Hb_029299_010 Hb_007713_010 Hb_007713_010 Hb_022500_010--Hb_007713_010 Hb_004116_110 Hb_004116_110 Hb_022500_010--Hb_004116_110 Hb_015401_010 Hb_015401_010 Hb_022500_010--Hb_015401_010 Hb_000367_170 Hb_000367_170 Hb_022500_010--Hb_000367_170 Hb_188382_010 Hb_188382_010 Hb_022500_010--Hb_188382_010 Hb_029299_010--Hb_007713_010 Hb_039305_010 Hb_039305_010 Hb_029299_010--Hb_039305_010 Hb_002498_090 Hb_002498_090 Hb_029299_010--Hb_002498_090 Hb_003773_030 Hb_003773_030 Hb_029299_010--Hb_003773_030 Hb_012324_020 Hb_012324_020 Hb_029299_010--Hb_012324_020 Hb_007713_010--Hb_003773_030 Hb_007477_090 Hb_007477_090 Hb_007713_010--Hb_007477_090 Hb_007713_010--Hb_039305_010 Hb_000979_050 Hb_000979_050 Hb_007713_010--Hb_000979_050 Hb_004691_040 Hb_004691_040 Hb_004116_110--Hb_004691_040 Hb_015675_060 Hb_015675_060 Hb_004116_110--Hb_015675_060 Hb_048197_010 Hb_048197_010 Hb_004116_110--Hb_048197_010 Hb_174107_010 Hb_174107_010 Hb_004116_110--Hb_174107_010 Hb_004116_110--Hb_188382_010 Hb_002742_010 Hb_002742_010 Hb_004116_110--Hb_002742_010 Hb_078604_010 Hb_078604_010 Hb_015401_010--Hb_078604_010 Hb_012532_030 Hb_012532_030 Hb_015401_010--Hb_012532_030 Hb_001405_130 Hb_001405_130 Hb_015401_010--Hb_001405_130 Hb_056768_010 Hb_056768_010 Hb_015401_010--Hb_056768_010 Hb_000348_040 Hb_000348_040 Hb_015401_010--Hb_000348_040 Hb_007574_060 Hb_007574_060 Hb_015401_010--Hb_007574_060 Hb_015978_070 Hb_015978_070 Hb_000367_170--Hb_015978_070 Hb_001575_030 Hb_001575_030 Hb_000367_170--Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_000367_170--Hb_001610_130 Hb_011310_060 Hb_011310_060 Hb_000367_170--Hb_011310_060 Hb_001053_160 Hb_001053_160 Hb_000367_170--Hb_001053_160 Hb_000009_040 Hb_000009_040 Hb_000367_170--Hb_000009_040 Hb_188382_010--Hb_015675_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0894994 0 0 0 0.253397 0.446312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.425025 1.5024 0 0 0

CAGE analysis